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Last updated on 2026-10-15 05:58:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 6.48 | 79.79 | 86.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 4.78 | 57.24 | 62.02 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 55.01 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 59.12 | OK | |||
| r-devel-windows-x86_64 | 0.2.0 | 8.00 | 159.00 | 167.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 5.79 | 71.87 | 77.66 | ERROR | |
| r-release-linux-x86_64 | 0.2.0 | 6.08 | 71.61 | 77.69 | OK | |
| r-release-macos-arm64 | 0.2.0 | 1.00 | 89.00 | 90.00 | OK | |
| r-release-macos-x86_64 | 0.2.0 | 4.00 | 142.00 | 146.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 8.00 | 148.00 | 156.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 1.00 | 95.00 | 96.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.0 | 4.00 | 162.00 | 166.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 10.00 | 167.00 | 177.00 | OK |
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> testthat::test_check("scholidonline")
Loading required package: scholidonline
Waiting 0.75 seconds before Europe PMC request.
Waiting 0.27 seconds before NCBI request.
Waiting 0.29 seconds before NCBI request.
Waiting 0.25 seconds before NCBI request.
Waiting 0.28 seconds before NCBI request.
Waiting 0.28 seconds before NCBI request.
Waiting 0.28 seconds before NCBI request.
Waiting 0.29 seconds before NCBI request.
Waiting 0.29 seconds before NCBI request.
Waiting 0.31 seconds before NCBI request.
Waiting 0.31 seconds before NCBI request.
Saving _problems/test-providers_ncbi_geo-offline-182.R
[ FAIL 1 | WARN 0 | SKIP 59 | PASS 1666 ]
══ Skipped tests (59) ══════════════════════════════════════════════════════════
• On CRAN (59): 'test-dispatchers_convert-online.R:4:5',
'test-id_convert-ncbi-batch-online.R:4:3',
'test-id_convert-ncbi-batch-online.R:21:3',
'test-id_convert-ncbi-batch-online.R:38:3',
'test-id_convert-ncbi-batch-online.R:59:3',
'test-id_convert-ncbi-batch-online.R:80:3',
'test-id_convert-ncbi-batch-online.R:98:3',
'test-id_convert-ncbi-batch-online.R:120:3', 'test-id_convert-online.R:2:3',
'test-id_convert-online.R:19:3', 'test-id_convert-online.R:36:3',
'test-id_convert-online.R:53:3', 'test-id_convert-online.R:70:3',
'test-id_convert-online.R:94:3', 'test-id_convert-online.R:145:3',
'test-id_convert-online.R:159:3', 'test-id_convert-online.R:174:3',
'test-id_convert-online.R:195:3', 'test-id_exists-ncbi-batch-online.R:2:3',
'test-id_exists-ncbi-batch-online.R:37:3', 'test-id_exists-online.R:4:5',
'test-id_exists-online.R:48:5', 'test-id_exists-online.R:65:5',
'test-id_exists-online.R:90:5', 'test-id_exists-online.R:115:5',
'test-id_exists-online.R:135:5', 'test-id_exists-online.R:155:5',
'test-id_exists-online.R:172:5', 'test-id_exists-online.R:229:3',
'test-id_links-arxiv-batch-online.R:2:3',
'test-id_links-ncbi-batch-online.R:2:3',
'test-id_links-ncbi-batch-online.R:38:3', 'test-id_links-online.R:2:3',
'test-id_links-online.R:37:3', 'test-id_links-online.R:71:3',
'test-id_links-online.R:103:3', 'test-id_links-online.R:135:3',
'test-id_links-online.R:169:3', 'test-id_links-online.R:205:5',
'test-id_links-online.R:249:5', 'test-id_links-online.R:277:5',
'test-id_links-online.R:311:5', 'test-id_links-online.R:345:5',
'test-id_metadata-arxiv-batch-online.R:4:5',
'test-id_metadata-ncbi-batch-online.R:2:3',
'test-id_metadata-ncbi-batch-online.R:38:3', 'test-id_metadata-online.R:2:3',
'test-id_metadata-online.R:22:3', 'test-id_metadata-online.R:42:3',
'test-id_metadata-online.R:62:3', 'test-id_metadata-online.R:88:3',
'test-id_metadata-online.R:108:3', 'test-id_metadata-online.R:142:3',
'test-id_metadata-online.R:176:3', 'test-id_metadata-online.R:190:3',
'test-provider_arxiv_helpers-online.R:2:3',
'test-provider_arxiv_helpers-online.R:56:3',
'test-providers_epmc-online.R:36:3', 'test-providers_epmc-online.R:54:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-providers_ncbi_geo-offline.R:180:5'): .exists_geo_ncbi() returns FALSE for empty uids ──
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(req = req)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [eutils.ncbi.nlm.nih.gov]:
Resolving timed out after 10000 milliseconds
Backtrace:
▆
1. ├─testthat::expect_false(.exists_geo_ncbi("GSE2553", quiet = TRUE)) at test-providers_ncbi_geo-offline.R:180:5
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─scholidonline:::.exists_geo_ncbi("GSE2553", quiet = TRUE)
5. └─scholidonline:::.ncbi_geo_fetch_esummary(x = x, ..., quiet = quiet)
6. └─scholidonline:::.ncbi_accession_fetch_esummary(...)
7. └─scholidonline:::.ncbi_accession_esearch_ids(...)
8. └─scholidonline:::.scholidonline_esearch_entrez(...)
9. └─scholidonline:::.scholidonline_req_json(...)
10. └─scholidonline:::.scholidonline_req_perform(req)
11. └─httr2::req_perform(req = req)
12. └─httr2:::handle_resp(req, resp, error_call = error_call)
13. └─rlang::cnd_signal(resp)
[ FAIL 1 | WARN 0 | SKIP 59 | PASS 1666 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
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