CRAN Package Check Results for Package scDHA

Last updated on 2025-02-23 19:51:19 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.2.2	43.92	131.58	175.50	OK
r-devel-linux-x86_64-debian-gcc	1.2.2	32.77	92.68	125.45	OK
r-devel-linux-x86_64-fedora-clang	1.2.2			281.90	OK
r-devel-linux-x86_64-fedora-gcc	1.2.2			288.77	OK
r-devel-macos-arm64	1.2.2			75.00	OK
r-devel-macos-x86_64	1.2.2			148.00	OK
r-devel-windows-x86_64	1.2.2	30.00	8.00	38.00	ERROR
r-patched-linux-x86_64	1.2.2	42.72	122.19	164.91	OK
r-release-linux-x86_64	1.2.2	45.70	123.28	168.98	OK
r-release-macos-arm64	1.2.2			51.00	NOTE
r-release-macos-x86_64	1.2.2			85.00	NOTE
r-release-windows-x86_64	1.2.2	31.00	5.00	36.00	ERROR
r-oldrel-macos-arm64	1.2.2			92.00	ERROR
r-oldrel-macos-x86_64	1.2.2			205.00	NOTE
r-oldrel-windows-x86_64	1.2.2	36.00	9.00	45.00	ERROR

Check Details

Version: 1.2.2
Check: whether package can be installed
Result: ERROR Installation failed. Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.2.2
Check: installed package size
Result: NOTE installed size is 6.4Mb sub-directories of 1Mb or more: data 3.2Mb libs 2.9Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [2s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(scDHA) libtorch is not installed. Use `torch::install_torch()` to download and install libtorch > > on_cran <- function() !identical(Sys.getenv("NOT_CRAN"), "true") > > if((!torch::torch_is_installed()) & + (tolower(Sys.info()[["sysname"]]) != "windows") & + (!on_cran())) + { + torch::install_torch() + } > > Sys.setenv(IN_TEST_scDHA="true") > > test_check("scDHA") [ FAIL 1 | WARN 0 | SKIP 2 | PASS 3 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-scDHA.R:3:3', 'test-scDHA.R:41:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-scDHA.R:21:3'): scDHA.vis can run ────────────────────────────── Error in `irlba::irlba(L, nv = n, nu = 0, maxit = iters)`: function 'as_cholmod_sparse' not provided by package 'Matrix' Backtrace: ▆ 1. └─scDHA::scDHA.vis(result, ncores = 2, seed = 1) at test-scDHA.R:21:3 2. └─uwot::umap(data, n_threads = ncores) 3. └─uwot:::uwot(...) 4. └─uwot:::spectral_init(V, ndim = n_components, verbose = verbose) 5. └─uwot:::irlba_tsvd_normalized_laplacian_init(A, ndim, verbose = FALSE) 6. └─uwot:::irlba_spectral_tsvd(L, ndim + 1) 7. ├─base::suppressWarnings(...) 8. │ └─base::withCallingHandlers(...) 9. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters) [ FAIL 1 | WARN 0 | SKIP 2 | PASS 3 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64