Last updated on 2025-08-14 17:48:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.0 | 132.24 | 556.81 | 689.05 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.2.0 | 97.22 | 384.34 | 481.56 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.2.0 | 1184.21 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2.0 | 1117.10 | ERROR | |||
| r-devel-windows-x86_64 | 2.2.0 | 149.00 | 609.00 | 758.00 | ERROR | |
| r-patched-linux-x86_64 | 2.2.0 | 143.14 | 538.30 | 681.44 | OK | |
| r-release-linux-x86_64 | 2.2.0 | 126.52 | 539.38 | 665.90 | OK | |
| r-release-macos-arm64 | 2.2.0 | 187.00 | OK | |||
| r-release-macos-x86_64 | 2.2.0 | 390.00 | OK | |||
| r-release-windows-x86_64 | 2.2.0 | 147.00 | 592.00 | 739.00 | OK | |
| r-oldrel-macos-arm64 | 2.2.0 | 219.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.2.0 | 433.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.2.0 | 181.00 | 794.00 | 975.00 | OK |
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotPairwiseDEGHeatmap 7.539 0.215 8.649
createLiger 6.478 0.454 8.022
plotClusterFactorDot 4.727 0.365 6.186
plotMarkerHeatmap 4.158 0.095 5.224
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotPairwiseDEGHeatmap 5.884 0.399 6.570
createLiger 4.241 0.387 5.905
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘reactome.db’
Flavor: r-oldrel-macos-arm64
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 11.1Mb
sub-directories of 1Mb or more:
R 2.1Mb
libs 6.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.