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Last updated on 2026-09-01 11:51:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 4.64 | 422.39 | 427.03 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 3.64 | 333.26 | 336.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 318.22 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 323.13 | OK | |||
| r-devel-windows-x86_64 | 0.2.2 | 6.00 | 549.00 | 555.00 | OK | |
| r-patched-linux-x86_64 | 0.2.2 | 4.81 | 456.38 | 461.19 | OK | |
| r-release-linux-x86_64 | 0.2.2 | 3.89 | 461.88 | 465.77 | OK | |
| r-release-macos-arm64 | 0.2.2 | 1.00 | 306.00 | 307.00 | OK | |
| r-release-macos-x86_64 | 0.2.2 | 3.00 | 661.00 | 664.00 | OK | |
| r-release-windows-x86_64 | 0.2.2 | 9.00 | 545.00 | 554.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.2 | 1.00 | 179.00 | 180.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.2.2 | 3.00 | 377.00 | 380.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.2.2 | 9.00 | 653.00 | 662.00 | ERROR |
Version: 0.2.2
Check: examples
Result: ERROR
Running examples in ‘repo.data-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bioc_cran_archived
> ### Title: Bioconductor packages using CRAN archived packages
> ### Aliases: bioc_cran_archived
>
> ### ** Examples
>
> bca <- bioc_cran_archived()
Downloading and caching packages available on Bioconductor for this session.
Downloading and caching CRAN's packages database for this session.
Error in bioc[, columns] : incorrect number of dimensions
Calls: bioc_cran_archived -> rbind -> rbind
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘test-actions.R’ [5s/7s]
Running ‘test-alias.R’ [41s/51s]
Running ‘test-bioconductor.R’ [2s/33s]
Running ‘test-cran_actions.R’ [5s/7s]
Running ‘test-cran_archive.R’ [27s/30s]
Running ‘test-cran_doom.R’ [4s/33s]
Running ‘test-cran_history.R’ [0s/0s]
Running ‘test-cran_issues.R’ [1s/1s]
Running ‘test-cran_targets_links.R’ [0s/0s]
Running ‘test-cran_version.R’ [5s/6s]
Running ‘test-dates.R’ [3s/5s]
Running ‘test-help.R’ [0s/0s]
Running ‘test-links.R’ [56s/78s]
Running ‘test-maintainers.R’ [3s/4s]
Running ‘test-package_date.R’ [4s/6s]
Running ‘test-package_repos.R’ [18s/54s]
Running ‘test-update_dependencies.R’ [30s/34s]
Running the tests in ‘tests/test-bioconductor.R’ failed.
Complete output:
> library("repo.data")
Attaching package: 'repo.data'
The following object is masked from 'package:stats':
alias
>
> bca <- bioc_cran_archived()
Downloading and caching packages available on Bioconductor for this session.
Downloading and caching CRAN's packages database for this session.
Error in bioc[, columns] : incorrect number of dimensions
Calls: bioc_cran_archived -> rbind -> rbind
Execution halted
Running the tests in ‘tests/test-cran_doom.R’ failed.
Complete output:
> library("repo.data")
Attaching package: 'repo.data'
The following object is masked from 'package:stats':
alias
> cd <- cran_doom()
Downloading and caching CRAN's packages database for this session.
> repo.data:::no_internet(cd)
> stopifnot(is.list(cd))
> stopifnot(names(cd) == c("time_till_last", "last_archived", "npackages", "details"))
> stopifnot(is.data.frame(cd$details))
> stopifnot(names(cd$details) == c("Package", "Deadline", "type", "repo", "n_affected"))
> wo_bioc <- nrow(cd$details)
> stopifnot(as.logical(wo_bioc))
> cd <- cran_doom(bioc = TRUE)
Downloading and caching packages available on Bioconductor for this session.
Error in bioc[, columns] : incorrect number of dimensions
Calls: cran_doom -> rbind -> rbind
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘test-actions.R’ [6s/12s]
Running ‘test-alias.R’ [9s/21s]
Running the tests in ‘tests/test-alias.R’ failed.
Complete output:
> library("repo.data")
Attaching package: 'repo.data'
The following object is masked from 'package:stats':
alias
> alias_columns <- c("Package", "Source", "Target")
> pkges <- c("BaseSet", "experDesign")
> bpkges <- c("tools", "compiler")
>
> # Test that cache works
> st <- system.time(ca <- cran_alias(pkges))
Downloading and caching CRAN aliases for this session.
> repo.data:::no_internet(ca)
> stopifnot(colnames(ca) == alias_columns)
> stopifnot(is.data.frame(ca))
> st1 <- system.time(ca2 <- cran_alias(pkges))
> stopifnot("Cache didn't work" = st1[[3]] < st[[3]])
> stopifnot("Cache was not the same" = all.equal(ca, ca2))
>
> clean_cache()
> st2 <- system.time(ca3 <- cran_alias(pkges))
Downloading and caching CRAN aliases for this session.
> repo.data:::no_internet(ca3)
> stopifnot("Clean cache restores initial state" = st2[[3]] > st1[[3]])
> stopifnot("Still same result" = all.equal(ca, ca3))
>
> ca <- cran_alias()
Warning: Packages with targets not present in a OS:
'sfsmisc'
> repo.data:::no_internet(ca)
> stopifnot(colnames(ca) == alias_columns)
> ca2 <- cran_alias()
> stopifnot("Cache returns the same for all packages" = all.equal(ca, ca2))
>
> st <- system.time(ba <- base_alias(bpkges))
Downloading and caching base R's aliases for this session.
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> stopifnot(is.data.frame(ba))
> st1 <- system.time(ba2 <- base_alias(bpkges))
> stopifnot("Cache didn't work" = st1[[3]] < st[[3]])
> stopifnot("Cache was not the same" = all.equal(ba, ba2))
>
> clean_cache()
> st2 <- system.time(ba3 <- base_alias(bpkges))
Downloading and caching base R's aliases for this session.
> repo.data:::no_internet(ba3)
> stopifnot("Clean cache restores initial state" = st2[[3]] > st1[[3]])
> stopifnot("Still same result" = all.equal(ba, ba3))
>
> ba <- base_alias()
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> ba2 <- base_alias()
> stopifnot("Cache returns the same for all packages" = all.equal(ba, ba2))
>
>
> clean_cache()
>
> oldrepos <- getOption("repos")
> on.exit(options(oldrepos), add = TRUE)
> setRepositories(ind = 2, addURLs = c(CRAN = "https://cran.r-project.org"))
> pkges <- c(pkges, "BioCor")
>
> st <- system.time(ba <- alias(pkges))
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> st1 <- system.time(ba2 <- alias(pkges))
> stopifnot("Cache alias didn't work" = any(st1 < st))
> stopifnot("Alias with cache was not the same" = all.equal(ba, ba2))
> missing_pkg <- pkges[!pkges %in% ba2$Package]
>
> if (length(missing_pkg)) {
+ stop(sprintf("All packages are present on alias output: %s", toString(missing_pkg)))
+ }
Error: All packages are present on alias output: BioCor
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.2.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘test-actions.R’ [12s/25s]
Running ‘test-alias.R’ [17s/35s]
Running the tests in ‘tests/test-alias.R’ failed.
Complete output:
> library("repo.data")
Attaching package: 'repo.data'
The following object is masked from 'package:stats':
alias
> alias_columns <- c("Package", "Source", "Target")
> pkges <- c("BaseSet", "experDesign")
> bpkges <- c("tools", "compiler")
>
> # Test that cache works
> st <- system.time(ca <- cran_alias(pkges))
Downloading and caching CRAN aliases for this session.
> repo.data:::no_internet(ca)
> stopifnot(colnames(ca) == alias_columns)
> stopifnot(is.data.frame(ca))
> st1 <- system.time(ca2 <- cran_alias(pkges))
> stopifnot("Cache didn't work" = st1[[3]] < st[[3]])
> stopifnot("Cache was not the same" = all.equal(ca, ca2))
>
> clean_cache()
> st2 <- system.time(ca3 <- cran_alias(pkges))
Downloading and caching CRAN aliases for this session.
> repo.data:::no_internet(ca3)
> stopifnot("Clean cache restores initial state" = st2[[3]] > st1[[3]])
> stopifnot("Still same result" = all.equal(ca, ca3))
>
> ca <- cran_alias()
Warning: Packages with targets not present in a OS:
'sfsmisc'
> repo.data:::no_internet(ca)
> stopifnot(colnames(ca) == alias_columns)
> ca2 <- cran_alias()
> stopifnot("Cache returns the same for all packages" = all.equal(ca, ca2))
>
> st <- system.time(ba <- base_alias(bpkges))
Downloading and caching base R's aliases for this session.
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> stopifnot(is.data.frame(ba))
> st1 <- system.time(ba2 <- base_alias(bpkges))
> stopifnot("Cache didn't work" = st1[[3]] < st[[3]])
> stopifnot("Cache was not the same" = all.equal(ba, ba2))
>
> clean_cache()
> st2 <- system.time(ba3 <- base_alias(bpkges))
Downloading and caching base R's aliases for this session.
> repo.data:::no_internet(ba3)
> stopifnot("Clean cache restores initial state" = st2[[3]] > st1[[3]])
> stopifnot("Still same result" = all.equal(ba, ba3))
>
> ba <- base_alias()
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> ba2 <- base_alias()
> stopifnot("Cache returns the same for all packages" = all.equal(ba, ba2))
>
>
> clean_cache()
>
> oldrepos <- getOption("repos")
> on.exit(options(oldrepos), add = TRUE)
> setRepositories(ind = 2, addURLs = c(CRAN = "https://cran.r-project.org"))
> pkges <- c(pkges, "BioCor")
>
> st <- system.time(ba <- alias(pkges))
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> st1 <- system.time(ba2 <- alias(pkges))
> stopifnot("Cache alias didn't work" = any(st1 < st))
> stopifnot("Alias with cache was not the same" = all.equal(ba, ba2))
> missing_pkg <- pkges[!pkges %in% ba2$Package]
>
> if (length(missing_pkg)) {
+ stop(sprintf("All packages are present on alias output: %s", toString(missing_pkg)))
+ }
Error: All packages are present on alias output: BioCor
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.2.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'test-actions.R' [1s]
Running 'test-alias.R' [36s]
Running 'test-bioconductor.R' [6s]
Running 'test-cran_actions.R' [1s]
Running 'test-cran_archive.R' [57s]
Running 'test-cran_doom.R' [12s]
Running 'test-cran_history.R' [0s]
Running 'test-cran_issues.R' [1s]
Running 'test-cran_targets_links.R' [0s]
Running 'test-cran_version.R' [7s]
Running 'test-dates.R' [4s]
Running 'test-help.R' [0s]
Running 'test-links.R' [69s]
Running 'test-maintainers.R' [4s]
Running 'test-package_date.R' [6s]
Running 'test-package_repos.R' [35s]
Running 'test-update_dependencies.R' [59s]
Running the tests in 'tests/test-alias.R' failed.
Complete output:
> library("repo.data")
Attaching package: 'repo.data'
The following object is masked from 'package:stats':
alias
> alias_columns <- c("Package", "Source", "Target")
> pkges <- c("BaseSet", "experDesign")
> bpkges <- c("tools", "compiler")
>
> # Test that cache works
> st <- system.time(ca <- cran_alias(pkges))
Downloading and caching CRAN aliases for this session.
> repo.data:::no_internet(ca)
> stopifnot(colnames(ca) == alias_columns)
> stopifnot(is.data.frame(ca))
> st1 <- system.time(ca2 <- cran_alias(pkges))
> stopifnot("Cache didn't work" = st1[[3]] < st[[3]])
> stopifnot("Cache was not the same" = all.equal(ca, ca2))
>
> clean_cache()
> st2 <- system.time(ca3 <- cran_alias(pkges))
Downloading and caching CRAN aliases for this session.
> repo.data:::no_internet(ca3)
> stopifnot("Clean cache restores initial state" = st2[[3]] > st1[[3]])
> stopifnot("Still same result" = all.equal(ca, ca3))
>
> ca <- cran_alias()
Warning: Packages with targets not present in a OS:
'sfsmisc'
> repo.data:::no_internet(ca)
> stopifnot(colnames(ca) == alias_columns)
> ca2 <- cran_alias()
> stopifnot("Cache returns the same for all packages" = all.equal(ca, ca2))
>
> st <- system.time(ba <- base_alias(bpkges))
Downloading and caching base R's aliases for this session.
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> stopifnot(is.data.frame(ba))
> st1 <- system.time(ba2 <- base_alias(bpkges))
> stopifnot("Cache didn't work" = st1[[3]] < st[[3]])
> stopifnot("Cache was not the same" = all.equal(ba, ba2))
>
> clean_cache()
> st2 <- system.time(ba3 <- base_alias(bpkges))
Downloading and caching base R's aliases for this session.
> repo.data:::no_internet(ba3)
> stopifnot("Clean cache restores initial state" = st2[[3]] > st1[[3]])
> stopifnot("Still same result" = all.equal(ba, ba3))
>
> ba <- base_alias()
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> ba2 <- base_alias()
> stopifnot("Cache returns the same for all packages" = all.equal(ba, ba2))
>
>
> clean_cache()
>
> oldrepos <- getOption("repos")
> on.exit(options(oldrepos), add = TRUE)
> setRepositories(ind = 2, addURLs = c(CRAN = "https://cran.r-project.org"))
> pkges <- c(pkges, "BioCor")
>
> st <- system.time(ba <- alias(pkges))
> repo.data:::no_internet(ba)
> stopifnot(colnames(ba) == alias_columns)
> st1 <- system.time(ba2 <- alias(pkges))
> stopifnot("Cache alias didn't work" = any(st1 < st))
> stopifnot("Alias with cache was not the same" = all.equal(ba, ba2))
> missing_pkg <- pkges[!pkges %in% ba2$Package]
>
> if (length(missing_pkg)) {
+ stop(sprintf("All packages are present on alias output: %s", toString(missing_pkg)))
+ }
Error: All packages are present on alias output: BioCor
Execution halted
Flavor: r-oldrel-windows-x86_64
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