CRAN Package Check Results for Package readyomics

Last updated on 2025-08-22 13:49:26 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.0	3.75	184.48	188.23	OK
r-devel-linux-x86_64-debian-gcc	0.1.0	2.67	124.96	127.63	OK
r-devel-linux-x86_64-fedora-clang	0.1.0			311.85	OK
r-devel-linux-x86_64-fedora-gcc	0.1.0			304.05	OK
r-devel-windows-x86_64	0.1.0	9.00	192.00	201.00	OK
r-release-macos-arm64	0.1.0			123.00	ERROR
r-release-macos-x86_64	0.1.0			129.00	ERROR
r-release-windows-x86_64	0.1.0	11.00	191.00	202.00	OK
r-oldrel-macos-x86_64	0.1.0			213.00	OK
r-oldrel-windows-x86_64	0.1.0	9.00	229.00	238.00	OK

Check Details

Version: 0.1.0
Check: examples
Result: ERROR Running examples in ‘readyomics-Ex.R’ failed The error most likely occurred in: > ### Name: mva > ### Title: Multivariate analysis (PCA, PLS, OPLS) > ### Aliases: mva > > ### ** Examples > > # PCA > set.seed(123) > mock_X <- matrix(rnorm(40), + nrow = 10, + dimnames = list(paste0("sample", 1:10), + paste0("feat", 1:4)) + ) > > sample_data <- data.frame( + sample_id = rownames(mock_X), + group = factor(rep(c("A", "B"), each = 5)), + batch = factor(rep(1:2, times = 5)), + row.names = rownames(mock_X), + stringsAsFactors = FALSE + ) > > result <- mva( + X = mock_X, + sample_data = sample_data, + group_colour = "group", + group_shape = "batch", + plot_title = "Test PCA Plot", + predI = 2, # PCA: set components + verbose = FALSE + ) Error in loadNamespace(x) : there is no package called ‘ropls’ Calls: mva ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘readyomics.Rmd’ using rmarkdown Quitting from readyomics.Rmd:176-185 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'ropls' --- Backtrace: ▆ 1. ├─readyomics::mva(...) 2. └─base::loadNamespace(x) 3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 4. └─base (local) withOneRestart(expr, restarts[[1L]]) 5. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'readyomics.Rmd' failed with diagnostics: there is no package called 'ropls' --- failed re-building ‘readyomics.Rmd’ SUMMARY: processing the following file failed: ‘readyomics.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64