CRAN Package Check Results for Package rcdf

Last updated on 2026-08-06 23:51:36 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.6	4.67	89.63	94.30	NOTE
r-devel-linux-x86_64-debian-gcc	0.1.6	3.51	59.07	62.58	NOTE
r-devel-linux-x86_64-fedora-clang	0.1.6			44.42	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.6	4.00	66.11	70.11	NOTE
r-devel-windows-x86_64	0.1.6	7.00	105.00	112.00	NOTE
r-patched-linux-x86_64	0.1.6	4.38	84.06	88.44	OK
r-release-linux-x86_64	0.1.6	4.32	84.56	88.88	OK
r-release-macos-arm64	0.1.6	1.00	33.00	34.00	OK
r-release-macos-x86_64	0.1.6	4.00	165.00	169.00	OK
r-release-windows-x86_64	0.1.6	7.00	108.00	115.00	OK
r-oldrel-macos-arm64	0.1.6	1.00	33.00	34.00	OK
r-oldrel-macos-x86_64	0.1.6	4.00	159.00	163.00	OK
r-oldrel-windows-x86_64	0.1.6	8.00	140.00	148.00	OK

Check Details

Version: 0.1.6
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: rcdf/R/read_dot_env.R (.Names: 1) '.Names' should be changed to 'names'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 0.1.6
Check: examples
Result: ERROR Running examples in ‘rcdf-Ex.R’ failed The error most likely occurred in: > ### Name: write_rcdf_csv > ### Title: Write RCDF data to CSV files > ### Aliases: write_rcdf_csv > > ### ** Examples > > dir <- system.file("extdata", package = "rcdf") > rcdf_path <- file.path(dir, 'mtcars.rcdf') > private_key <- file.path(dir, 'sample-private-key-pw.pem') > > rcdf_data <- read_rcdf(path = rcdf_path, decryption_key = private_key, password = '1234') duckdb is storing downloaded extensions and secrets under ~/.duckdb: ℹ /data/localhost/ripley/.duckdb This persists across sessions and is shared with the DuckDB CLI and other clients. ℹ Run duckdb(shared_home = FALSE) to use a temporary directory instead. ℹ See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: • Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). • INSTALL/LOAD of an extension will error, and automatic extension loading is off. ℹ Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. ℹ Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). ℹ See ?duckdb for details. *** caught segfault *** address 0xff270000f8, cause 'memory not mapped' Traceback: 1: rapi_prepare(conn, query, env) 2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}) 3: doTryCatch(return(expr), name, parentenv, handler) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5: tryCatchList(expr, classes, parentenv, handlers) 6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]]) 7: rlang::try_fetch(rapi_prepare(conn, query, env), error = function(e) { rethrow_error_from_rapi(e, call)}) 8: rethrow_rapi_prepare(conn@conn_ref, statement, env) 9: .local(conn, statement, ...) 10: dbSendQuery(conn, statement, ...) 11: dbSendQuery(conn, statement, ...) 12: dbSendStatement(conn, statement, ...) 13: dbSendStatement(conn, statement, ...) 14: DBI::dbExecute(conn, sprintf("CREATE TABLE %s AS\n SELECT * FROM read_parquet(%s,\n encryption_config = { footer_key: %s });", sql_ident(conn, record), sql_literal(conn, pq_file), sql_literal(conn, secret$key))) 15: DBI::dbExecute(conn, sprintf("CREATE TABLE %s AS\n SELECT * FROM read_parquet(%s,\n encryption_config = { footer_key: %s });", sql_ident(conn, record), sql_literal(conn, pq_file), sql_literal(conn, secret$key))) 16: process_parquet_file(conn, pq_file, secret, pk, registered_keys) 17: process_rcdf_file(conn = conn, rcdf_file = rcdf_files[i], key = creds$keys[i], password = creds$passwords[i], metadata = metadata, ignore_duplicates = ignore_duplicates) 18: read_rcdf(path = rcdf_path, decryption_key = private_key, password = "1234") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.6
Check: tests
Result: ERROR Running ‘testthat.R’ [3s/14s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(rcdf) > > test_check("rcdf") duckdb is storing downloaded extensions and secrets under ~/.duckdb: i /data/localhost/ripley/.duckdb This persists across sessions and is shared with the DuckDB CLI and other clients. i Run duckdb(shared_home = FALSE) to use a temporary directory instead. i See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: * Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). * INSTALL/LOAD of an extension will error, and automatic extension loading is off. i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). i See ?duckdb for details. duckdb is storing downloaded extensions and secrets under ~/.duckdb: i /data/localhost/ripley/.duckdb This persists across sessions and is shared with the DuckDB CLI and other clients. i Run duckdb(shared_home = FALSE) to use a temporary directory instead. i See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: * Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). * INSTALL/LOAD of an extension will error, and automatic extension loading is off. i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). i See ?duckdb for details. duckdb is storing downloaded extensions and secrets under ~/.duckdb: i /data/localhost/ripley/.duckdb This persists across sessions and is shared with the DuckDB CLI and other clients. i Run duckdb(shared_home = FALSE) to use a temporary directory instead. i See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: * Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). * INSTALL/LOAD of an extension will error, and automatic extension loading is off. i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). i See ?duckdb for details. duckdb is storing downloaded extensions and secrets under ~/.duckdb: i /data/localhost/ripley/.duckdb This persists across sessions and is shared with the DuckDB CLI and other clients. i Run duckdb(shared_home = FALSE) to use a temporary directory instead. i See ?duckdb_storage for details and alternatives. duckdb was built with libc++ (not libstdc++) on Linux, so DuckDB extensions are disabled: * Loading a prebuilt (libstdc++) extension could crash R (https://github.com/duckdb/duckdb-r/issues/1107). * INSTALL/LOAD of an extension will error, and automatic extension loading is off. i Pass duckdb(allow_extensions = FALSE) to accept this and silence this message. i Pass duckdb(allow_extensions = TRUE) to attempt loading anyway (may crash R). i See ?duckdb for details. *** caught segfault *** address 0x9000000f9, cause 'memory not mapped' Traceback: 1: rapi_prepare(conn, query, env) 2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}) 3: doTryCatch(return(expr), name, parentenv, handler) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5: tryCatchList(expr, classes, parentenv, handlers) 6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]]) 7: rlang::try_fetch(rapi_prepare(conn, query, env), error = function(e) { rethrow_error_from_rapi(e, call)}) 8: rethrow_rapi_prepare(conn@conn_ref, statement, env) 9: .local(conn, statement, ...) 10: dbSendQuery(conn, statement, ...) 11: dbSendQuery(conn, statement, ...) 12: dbSendStatement(conn, statement, ...) 13: dbSendStatement(conn, statement, ...) 14: DBI::dbExecute(conn, sprintf("CREATE TABLE %s AS\n SELECT * FROM read_parquet(%s,\n encryption_config = { footer_key: %s });", sql_ident(conn, record), sql_literal(conn, pq_file), sql_literal(conn, secret$key))) 15: DBI::dbExecute(conn, sprintf("CREATE TABLE %s AS\n SELECT * FROM read_parquet(%s,\n encryption_config = { footer_key: %s });", sql_ident(conn, record), sql_literal(conn, pq_file), sql_literal(conn, secret$key))) 16: process_parquet_file(conn, pq_file, secret, pk, registered_keys) 17: process_rcdf_file(conn = conn, rcdf_file = rcdf_files[i], key = creds$keys[i], password = creds$passwords[i], metadata = metadata, ignore_duplicates = ignore_duplicates) 18: read_rcdf(path = rcdf_files, decryption_key = decryption_keys, password = passwords, return_meta = TRUE) 19: merge_rcdf(rcdf_files = c(f1$path, f2$path), decryption_keys = c(f1$prv, f2$prv), passwords = c(NULL, NULL), merged_file_path = merged_path, pub_key = file.path(dir, "merge-pub.pem")) 20: eval(code, test_env) 21: eval(code, test_env) 22: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt) 23: doTryCatch(return(expr), name, parentenv, handler) 24: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 25: tryCatchList(expr, classes, parentenv, handlers) 26: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal) 27: doWithOneRestart(return(expr), restart) 28: withOneRestart(expr, restarts[[1L]]) 29: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { }) 30: test_code(code, parent.frame()) 31: test_that("merge_rcdf with explicit pub_key merges files and round-trips data", { dir <- withr::local_tempdir() f1 <- create_rcdf_for_merge(dir, "f1", list(t1 = data.frame(a = 1:3))) f2 <- create_rcdf_for_merge(dir, "f2", list(t2 = data.frame(b = 4:6))) merge_pub_key <- openssl::rsa_keygen() openssl::write_pem(merge_pub_key$pubkey, file.path(dir, "merge-pub.pem")) openssl::write_pem(merge_pub_key, file.path(dir, "merge-prv.pem")) merged_path <- file.path(dir, "merged.rcdf") merge_rcdf(rcdf_files = c(f1$path, f2$path), decryption_keys = c(f1$prv, f2$prv), passwords = c(NULL, NULL), merged_file_path = merged_path, pub_key = file.path(dir, "merge-pub.pem")) expect_true(file.exists(merged_path)) result <- read_rcdf(merged_path, decryption_key = file.path(dir, "merge-prv.pem")) expect_s3_class(result, "rcdf") expect_true("t1" %in% names(result)) expect_true("t2" %in% names(result)) }) 32: eval(code, test_env) 33: eval(code, test_env) 34: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt) 35: doTryCatch(return(expr), name, parentenv, handler) 36: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 37: tryCatchList(expr, classes, parentenv, handlers) 38: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal) 39: doWithOneRestart(return(expr), restart) 40: withOneRestart(expr, restarts[[1L]]) 41: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { }) 42: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new()) 43: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call) 44: FUN(X[[i]], ...) 45: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call) 46: doTryCatch(return(expr), name, parentenv, handler) 47: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 48: tryCatchList(expr, classes, parentenv, handlers) 49: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 50: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)) 51: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call) 52: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle) 53: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 54: test_check("rcdf") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-clang