CRAN Package Check Results for Package rbiom

Last updated on 2025-04-02 20:52:13 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.1.2	18.43	2.56	20.99	ERROR
r-devel-linux-x86_64-debian-gcc	2.1.2	12.96	1.96	14.92	ERROR
r-devel-linux-x86_64-fedora-clang	2.1.2			37.62	ERROR
r-devel-linux-x86_64-fedora-gcc	2.1.2			36.34	ERROR
r-devel-macos-arm64	2.1.2			85.00	OK
r-devel-macos-x86_64	2.1.2			170.00	OK
r-devel-windows-x86_64	2.1.2	29.00	257.00	286.00	ERROR
r-patched-linux-x86_64	2.1.2	27.30	232.15	259.45	ERROR
r-release-linux-x86_64	2.1.2	22.03	227.78	249.81	OK
r-release-macos-arm64	2.1.2			111.00	OK
r-release-macos-x86_64	2.1.2			279.00	OK
r-release-windows-x86_64	2.1.2	34.00	250.00	284.00	OK
r-oldrel-macos-arm64	2.1.2			108.00	OK
r-oldrel-macos-x86_64	2.1.2			251.00	OK
r-oldrel-windows-x86_64	2.1.2	39.00	324.00	363.00	OK

Additional issues

gcc15

Check Details

Version: 2.1.2
Check: whether package can be installed
Result: ERROR Installation failed. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1.2
Check: tests
Result: ERROR Running 'testthat.r' [23s] Running the tests in 'tests/testthat.r' failed. Complete output: > library(testthat) > library(rbiom) > > test_check("rbiom") [ FAIL 1 | WARN 0 | SKIP 34 | PASS 191 ] ══ Skipped tests (34) ══════════════════════════════════════════════════════════ • On CRAN (34): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3', 'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3', 'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3', 'test-cache.r:3:3', 'test-convert.r:5:3', 'test-convert.r:24:3', 'test-convert.r:40:3', 'test-corrplot.r:11:3', 'test-distmat_ord_table.r:6:3', 'test-import_table.r:13:3', 'test-plot_heatmap.r:15:3', 'test-plot_palettes.r:6:3', 'test-provenance.r:3:3', 'test-rarefy.r:3:3', 'test-rbiom-deprecated.r:3:3', 'test-rbiom_objects.r:24:3', 'test-read_biom.r:3:3', 'test-read_fasta.r:3:3', 'test-read_tree.r:7:3', 'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3', 'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3', 'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3', 'test-validate.r:3:3', 'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-boxplot.r:7:3'): boxplot ───────────────────────────────────── `taxa_boxplot(rare5)` produced warnings. [ FAIL 1 | WARN 0 | SKIP 34 | PASS 191 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 2.1.2
Check: tests
Result: ERROR Running ‘testthat.r’ [22s/31s] Running the tests in ‘tests/testthat.r’ failed. Complete output: > library(testthat) > library(rbiom) > > test_check("rbiom") [ FAIL 1 | WARN 0 | SKIP 34 | PASS 191 ] ══ Skipped tests (34) ══════════════════════════════════════════════════════════ • On CRAN (34): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3', 'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3', 'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3', 'test-cache.r:3:3', 'test-convert.r:5:3', 'test-convert.r:24:3', 'test-convert.r:40:3', 'test-corrplot.r:11:3', 'test-distmat_ord_table.r:6:3', 'test-import_table.r:13:3', 'test-plot_heatmap.r:15:3', 'test-plot_palettes.r:6:3', 'test-provenance.r:3:3', 'test-rarefy.r:3:3', 'test-rbiom-deprecated.r:3:3', 'test-rbiom_objects.r:24:3', 'test-read_biom.r:3:3', 'test-read_fasta.r:3:3', 'test-read_tree.r:7:3', 'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3', 'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3', 'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3', 'test-validate.r:3:3', 'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-boxplot.r:7:3'): boxplot ───────────────────────────────────── `taxa_boxplot(rare5)` produced warnings. [ FAIL 1 | WARN 0 | SKIP 34 | PASS 191 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64