CRAN Package Check Results for Maintainer ‘Quentin Geissmann <qgeissmann at gmail.com>’

Last updated on 2025-12-28 05:50:36 CET.

Package	ERROR	OK
behavr	1	12
damr		13
ggetho	1	12
scopr	1	12
sleepr	1	12
zeitgebr	1	12

Package behavr

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.3
Check: examples
Result: ERROR Running examples in 'behavr-Ex.R' failed The error most likely occurred in: > ### Name: bin_apply > ### Title: Bin a variable (typically time) and compute an aggregate for > ### each bin > ### Aliases: bin_apply bin_apply_all > > ### ** Examples > > metadata <- data.frame(id = paste0("toy_experiment|",1:5)) > dt <- toy_activity_data(metadata, duration = days(2)) > > # average by 30min time bins, default > dt_binned <- bin_apply_all(dt, moving) > # equivalent to > dt_binned <- dt[, bin_apply(.SD, moving), by = "id"] > > # if we want the opposite of moving: > dt_binned <- bin_apply_all(dt, !moving) > > # More advanced usage > dt <- toy_dam_data(metadata, duration = days(2)) Error in `[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - : attempt access index 5/5 in VECTOR_ELT Calls: toy_dam_data -> [ -> [.behavr -> NextMethod -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.3
Check: tests
Result: ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(behavr) Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > > test_check("behavr") Saving _problems/test-behavr-157.R ==== METADATA ==== Key: <id> id condition sex <int> <char> <char> 1: 1 a M 2: 2 b M 3: 3 c M 4: 4 d F 5: 5 e F ====== DATA ====== Key: <id> id t x y eating <int> <int> <num> <num> <lgcl> 1: 1 1 -0.6264538 -0.62036668 TRUE 2: 1 2 0.1836433 0.04211587 FALSE 3: 1 3 -0.8356286 -0.91092165 TRUE 4: 1 4 1.5952808 0.15802877 TRUE 5: 1 5 0.3295078 -0.65458464 TRUE --- 496: 5 96 -2.0908461 -0.30824994 TRUE 497: 5 97 1.6973939 0.01551524 FALSE 498: 5 98 1.0638812 -0.44231772 TRUE 499: 5 99 -0.7666166 -1.63800773 FALSE 500: 5 100 0.3820076 -0.64140116 FALSE behavr table with: 5 individuals 2 metavariables 4 variables 5e+02 measurements 1 key (id) Summary of each individual (one per row): Key: <id> id condition sex data_points time_range <int> <char> <char> <int> <char> 1: 1 a M 100 [1 -> 100 (99)] 2: 2 b M 100 [1 -> 100 (99)] 3: 3 c M 100 [1 -> 100 (99)] 4: 4 d F 100 [1 -> 100 (99)] 5: 5 e F 100 [1 -> 100 (99)] behavr table with: 5 individuals 2 metavariables 4 variables 5e+02 measurements 1 key (id) Saving _problems/test-stitch_on-23.R Saving _problems/test-stitch_on-74.R Saving _problems/test-toy-data-13.R [ FAIL 4 | WARN 0 | SKIP 2 | PASS 74 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (2): 'test-print_summary.R:3:1', 'test-print_summary.R:12:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-behavr.R:157:3'): metadata columns can be extracted without id ── Error in ``[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id")`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. └─behavr::toy_dam_data(metadata = met, duration = hours(1)) at test-behavr.R:157:3 2. ├─out[, `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id"] 3. ├─behavr:::`[.behavr`(...) 4. ├─base::NextMethod() 5. └─data.table:::`[.data.table`(...) ── Error ('test-stitch_on.R:23:3'): stitch works ─────────────────────────────── Error in ``[.data.table`(md, , `:=`(lag, as.numeric(as.Date(time_ref__) - as.Date(min(time_ref__)), units = "secs")), by = on)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. └─behavr::stitch_on(d, on = "uid") at test-stitch_on.R:23:3 2. ├─...[] 3. └─data.table:::`[.data.table`(...) ── Failure ('test-stitch_on.R:74:3'): stitch fails when overlap ──────────────── `stitch_on(d, on = "uid")` threw an error with unexpected message. Expected match: "overlap" Actual message: "attempt access index 5/5 in VECTOR_ELT" Backtrace: ▆ 1. ├─testthat::expect_error(stitch_on(d, on = "uid"), "overlap") at test-stitch_on.R:74:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─behavr::stitch_on(d, on = "uid") 7. ├─...[] 8. └─data.table:::`[.data.table`(...) ── Error ('test-toy-data.R:13:3'): toy data returns behavr object ────────────── Error in ``[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id")`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. └─behavr::toy_dam_data() at test-toy-data.R:13:3 2. ├─out[, `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id"] 3. ├─behavr:::`[.behavr`(...) 4. ├─base::NextMethod() 5. └─data.table:::`[.data.table`(...) [ FAIL 4 | WARN 0 | SKIP 2 | PASS 74 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Package damr

Current CRAN status: OK: 13

Package ggetho

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.7
Check: tests
Result: ERROR Running 'testthat.R' [50s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(ggetho) Loading required package: ggplot2 Loading required package: behavr Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > > test_check("ggetho") Saving _problems/test-stat_tile-7.R [ FAIL 1 | WARN 292 | SKIP 1 | PASS 41 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-scales.R:47:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-stat_tile.R:7:3'): stat_bar_tile_works ───────────────────────── Error in ``[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id")`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. └─behavr::toy_dam_data(metadata, duration = days(4)) at test-stat_tile.R:7:3 2. ├─out[, `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id"] 3. ├─behavr:::`[.behavr`(...) 4. ├─base::NextMethod() 5. └─data.table:::`[.data.table`(...) [ FAIL 1 | WARN 292 | SKIP 1 | PASS 41 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Package scopr

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.5
Check: examples
Result: ERROR Running examples in 'scopr-Ex.R' failed The error most likely occurred in: > ### Name: link_ethoscope_metadata_remote > ### Title: Link ethoscope metadata to the matching result files > ### Aliases: link_ethoscope_metadata_remote link_ethoscope_metadata > > ### ** Examples > > # Metadata with no region_id -> all regions will be loaded with the same metadata > dir <- paste0(scopr_example_dir(), "/ethoscope_results/") > data(no_region_id_metadata) > metadata <- link_ethoscope_metadata(no_region_id_metadata, dir) Error in `[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", : attempt access index 6/6 in VECTOR_ELT Calls: link_ethoscope_metadata -> build_query -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.5
Check: tests
Result: ERROR Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(scopr) Loading required package: behavr Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > > test_check("scopr") Saving _problems/test-build_query-12.R Saving _problems/test-build_query-40.R Saving _problems/test-build_query-53.R Saving _problems/test-build_query-68.R Saving _problems/test-build_query-83.R machine_name date time test 1 E_014 2016-01-25 21:36:04 1 2 E_014 2016-02-17 <NA> 2 3 E_029 2016-01-25 <NA> 3 Saving _problems/test-build_query-110.R Saving _problems/test-link_ethocope_metadata-6.R Saving _problems/test-link_ethocope_metadata-24.R Saving _problems/test-link_ethocope_metadata-39.R Saving _problems/test-link_ethocope_metadata-60.R Saving _problems/test-link_ethocope_metadata-73.R Saving _problems/test-link_ethocope_metadata-94.R Saving _problems/test-link_ethoscope_metadata_remote-18.R Saving _problems/test-link_ethoscope_metadata_remote-55.R Saving _problems/test-load_ethoscope-11.R Saving _problems/test-load_ethoscope-23.R Saving _problems/test-load_ethoscope-36.R [ FAIL 17 | WARN 0 | SKIP 0 | PASS 17 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-build_query.R:12:3'): build query works when time is supplied ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::build_query(dir, query) at test-build_query.R:12:3 2. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 3. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:40:3'): build_query with date, machine name, and ROIs, and two experiments on the same date, but different times! ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::build_query(dir, query) at test-build_query.R:40:3 2. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 3. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:53:3'): build query works when only date supplied ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_query.R:53:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::build_query(dir, query) 7. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 8. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:68:3'): build query works when only date supplied and ROIs ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_query.R:68:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::build_query(dir, query) 7. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 8. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:83:3'): missing results! ───────────────────────── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-build_query.R:83:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::build_query(dir, query) 7. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 8. └─data.table:::`[.data.table`(...) ── Error ('test-build_query.R:110:3'): build query works datetime is a datetime, not a string (https://github.com/rethomics/scopr/issues/16) ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::build_query(dir, query) at test-build_query.R:110:3 2. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 3. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:6:3'): link_ethoscope_metadata with single file ── Error in ``[.data.table`(out, , `:=`(n, .N), keyby = key(out))`: attempt access index 3/3 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(test_file) at test-link_ethocope_metadata.R:6:3 2. ├─out[, `:=`(n, .N), keyby = key(out)] 3. └─data.table:::`[.data.table`(out, , `:=`(n, .N), keyby = key(out)) ── Error ('test-link_ethocope_metadata.R:24:3'): link_ethoscope_metadata with date and machine name ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-link_ethocope_metadata.R:24:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:39:3'): link_ethoscope_metadata with name of a text csv ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(file, dir) at test-link_ethocope_metadata.R:39:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:60:3'): link_ethoscope_metadata with date, machine name, and ROIs ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-link_ethocope_metadata.R:60:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethocope_metadata.R:73:3'): link_ethoscope_metadata with path ── Error in ``[.data.table`(out, , `:=`(n, .N), keyby = key(out))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-link_ethocope_metadata.R:73:3 2. ├─out[, `:=`(n, .N), keyby = key(out)] 3. └─data.table:::`[.data.table`(out, , `:=`(n, .N), keyby = key(out)) ── Error ('test-link_ethocope_metadata.R:94:3'): link_ethoscope_metadata detect duplicated rows ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-link_ethocope_metadata.R:94:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─scopr:::link_ethoscope_metadata(query, dir) 7. └─scopr:::build_query(result_dir, query, index_file) 8. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 9. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethoscope_metadata_remote.R:14:3'): link_ethoscope_metadata_remote with date and machine name ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::link_ethoscope_metadata_remote(...) at test-link_ethoscope_metadata_remote.R:14:3 2. └─scopr:::build_query(result_dir = remote_dir, query = query, index_file = index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-link_ethoscope_metadata_remote.R:51:3'): parse_query with date, machine name, and ROIs ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr:::link_ethoscope_metadata_remote(...) at test-link_ethoscope_metadata_remote.R:51:3 2. └─scopr:::build_query(result_dir = remote_dir, query = query, index_file = index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-load_ethoscope.R:11:3'): query ethoscopes functions ──────────── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(metadata, dir) at test-load_ethoscope.R:11:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-load_ethoscope.R:23:3'): query ethoscopes works ──────────────── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(metadata, dir) at test-load_ethoscope.R:23:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) ── Error ('test-load_ethoscope.R:36:3'): query ethoscopes works with multiple cores ── Error in ``[.data.table`(unique_fi_last_of_day, , `:=`(n, .N), by = c("date", "machine_name"))`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─scopr::link_ethoscope_metadata(query, dir) at test-load_ethoscope.R:36:3 2. └─scopr:::build_query(result_dir, query, index_file) 3. ├─unique_fi_last_of_day[, `:=`(n, .N), by = c("date", "machine_name")] 4. └─data.table:::`[.data.table`(...) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 17 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Package sleepr

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.1
Check: examples
Result: ERROR Running examples in 'sleepr-Ex.R' failed The error most likely occurred in: > ### Name: bout_analysis > ### Title: Find "bouts" in categorical time series > ### Aliases: bout_analysis > > ### ** Examples > > # Bout analysis on binary variable: > dt <- toy_dam_data() Error in `[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - : attempt access index 5/5 in VECTOR_ELT Calls: toy_dam_data -> [ -> [.behavr -> NextMethod -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.1
Check: tests
Result: ERROR Running 'testthat.R' [3s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(sleepr) Loading required package: behavr Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > > test_check("sleepr") Saving _problems/test-max_velocity_detector-10.R Saving _problems/test-max_velocity_detector-22.R Saving _problems/test-prepare_data_for_motion_detector-14.R Saving _problems/test-sleep_annotation-6.R Saving _problems/test-sleep_annotation-31.R Saving _problems/test-virtual_beam_cross_detector-10.R [ FAIL 6 | WARN 0 | SKIP 1 | PASS 25 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-bout_analysis.R:3:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-max_velocity_detector.R:10:3'): max_velocity_detector works ──── Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─sleepr::max_velocity_detector(data, 10) at test-max_velocity_detector.R:10:3 2. └─sleepr:::prepare_data_for_motion_detector(...) 3. └─sleepr:::curate_sparse_roi_data(d) 4. ├─data[, `:=`(n_points, .N), by = t_w] 5. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w) ── Error ('test-max_velocity_detector.R:21:3'): max_velocity_detector wans when no interaction and masking ── Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-max_velocity_detector.R:21:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─sleepr::max_velocity_detector(data, 10) 7. └─sleepr:::prepare_data_for_motion_detector(...) 8. └─sleepr:::curate_sparse_roi_data(d) 9. ├─data[, `:=`(n_points, .N), by = t_w] 10. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w) ── Error ('test-prepare_data_for_motion_detector.R:11:3'): prepare_data_for_motion_detector works ── Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 6/6 in VECTOR_ELT Backtrace: ▆ 1. └─sleepr:::prepare_data_for_motion_detector(...) at test-prepare_data_for_motion_detector.R:11:3 2. └─sleepr:::curate_sparse_roi_data(d) 3. ├─data[, `:=`(n_points, .N), by = t_w] 4. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w) ── Error ('test-sleep_annotation.R:6:3'): sleep_annotation works return expected results ── Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─sleepr::sleep_annotation(data, motion_detector_FUN = virtual_beam_cross_detector) at test-sleep_annotation.R:6:3 2. └─sleepr (local) wrapped(data) 3. └─sleepr (local) motion_detector_FUN(d, time_window_length, ...) 4. └─sleepr:::prepare_data_for_motion_detector(...) 5. └─sleepr:::curate_sparse_roi_data(d) 6. ├─data[, `:=`(n_points, .N), by = t_w] 7. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w) ── Error ('test-sleep_annotation.R:31:3'): sleep_annotation works for single or multiple animals ── Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─sleepr::sleep_annotation(data[id == 1][, -"id", with = F], motion_detector_FUN = virtual_beam_cross_detector) at test-sleep_annotation.R:31:3 2. └─sleepr (local) wrapped(data) 3. └─sleepr (local) motion_detector_FUN(d, time_window_length, ...) 4. └─sleepr:::prepare_data_for_motion_detector(...) 5. └─sleepr:::curate_sparse_roi_data(d) 6. ├─data[, `:=`(n_points, .N), by = t_w] 7. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w) ── Error ('test-virtual_beam_cross_detector.R:10:3'): virtual_beam_cross_detector works ── Error in ``[.data.table`(data, , `:=`(n_points, .N), by = t_w)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─sleepr::virtual_beam_cross_detector(data, 10) at test-virtual_beam_cross_detector.R:10:3 2. └─sleepr:::prepare_data_for_motion_detector(...) 3. └─sleepr:::curate_sparse_roi_data(d) 4. ├─data[, `:=`(n_points, .N), by = t_w] 5. └─data.table:::`[.data.table`(data, , `:=`(n_points, .N), by = t_w) [ FAIL 6 | WARN 0 | SKIP 1 | PASS 25 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Package zeitgebr

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.6
Check: examples
Result: ERROR Running examples in 'zeitgebr-Ex.R' failed The error most likely occurred in: > ### Name: find_peaks > ### Title: Find peaks in a periodogram > ### Aliases: find_peaks > > ### ** Examples > > data(dams_sample) > # only a half of the individuals for the sake of the example > dt <- dams_sample[xmv(region_id) %in% (1:16 * 2)] > per_dt_xs <- periodogram(activity, dt, FUN = chi_sq_periodogram) > per_dt_xs_with_peaks <- find_peaks(per_dt_xs) Error in `[.data.table`(out, , `:=`(peak, find_peaks_wapped(.SD, n_peaks = n_peaks)), : attempt access index 5/5 in VECTOR_ELT Calls: find_peaks -> [ -> [.behavr -> NextMethod -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.6
Check: tests
Result: ERROR Running 'testthat.R' [90s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(zeitgebr) Loading required package: behavr Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > > test_check("zeitgebr") Saving _problems/test-find_peaks-6.R [ FAIL 1 | WARN 0 | SKIP 4 | PASS 5 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • empty test (4): 'test-chi_sq_periodogram.R:3:1', 'test-cwt_periodogram.R:3:1', 'test-ls_periodogram.R:3:1', 'test-periodogram.R:3:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-find_peaks.R:6:3'): find_peaks works in normal conditions ────── Error in ``[.data.table`(out, , `:=`(peak, find_peaks_wapped(.SD, n_peaks = n_peaks)), by = c(data.table::key(out)))`: attempt access index 5/5 in VECTOR_ELT Backtrace: ▆ 1. └─zeitgebr::find_peaks(pdt) at test-find_peaks.R:6:3 2. ├─...[] 3. ├─behavr:::`[.behavr`(...) 4. ├─base::NextMethod() 5. └─data.table:::`[.data.table`(...) [ FAIL 1 | WARN 0 | SKIP 4 | PASS 5 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64