CRAN Package Check Results for Package qMRI

Last updated on 2025-03-09 20:52:03 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.2.7.8	14.15	91.10	105.25	ERROR
r-devel-linux-x86_64-debian-gcc	1.2.7.9	8.88	78.79	87.67	OK
r-devel-linux-x86_64-fedora-clang	1.2.7.9			222.61	OK
r-devel-linux-x86_64-fedora-gcc	1.2.7.9			214.51	OK
r-devel-macos-arm64	1.2.7.9			123.00	OK
r-devel-macos-x86_64	1.2.7.9			211.00	OK
r-devel-windows-x86_64	1.2.7.9	19.00	182.00	201.00	OK
r-patched-linux-x86_64	1.2.7.9	13.64	104.68	118.32	OK
r-release-linux-x86_64	1.2.7.9	12.02	104.86	116.88	OK
r-release-macos-arm64	1.2.7.9			101.00	OK
r-release-macos-x86_64	1.2.7.9			234.00	OK
r-release-windows-x86_64	1.2.7.9	19.00	179.00	198.00	OK
r-oldrel-macos-arm64	1.2.7.9			95.00	OK
r-oldrel-macos-x86_64	1.2.7.9			208.00	OK
r-oldrel-windows-x86_64	1.2.7.9	22.00	234.00	256.00	OK

Check Details

Version: 1.2.7.8
Check: examples
Result: ERROR Running examples in ‘qMRI-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: estimateIRfluid > ### Title: Estimate parameters in Inversion Recovery MRI experiments model > ### for CSF voxel > ### Aliases: estimateIRfluid > ### Keywords: models regression > > ### ** Examples > > dataDir0 <- system.file("extdataIR", package = "qMRI") > dataDir <- tempdir("IRdata") Error in tempdir(check) : NA in coercion to boolean Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed calculateQI 5.296 0.072 6.359 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘IRMRI-Example.Rnw’ using Sweave Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics: chunk 2 (label = 0b) Error in tempdir(check) : NA in coercion to boolean --- failed re-building ‘IRMRI-Example.Rnw’ --- re-building ‘qMRI-Example.Rnw’ using Sweave Loading required package: awsMethods Use the function setCores() to change the number of CPU cores. Loading required package: parallel Reading RAW images requires to install dcraw, see http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/ for macOS and Windows Use awsMethods::setCores(ncores) to specify number of cores for openMP oro.nifti 0.11.4 --- finished re-building ‘qMRI-Example.Rnw’ make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qMRI.Rcheck/vign_test/qMRI/vignettes' pdflatex -interaction nonstopmode IRMRI-Example.tex This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./IRMRI-Example.tex LaTeX2e <2024-11-01> patch level 1 L3 programming layer <2024-12-25> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/06/29 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/filecontents/filecontents.sty Package filecontents Warning: This package is obsolete. Disabling it and (filecontents) passing control to the filecontents environment (filecontents) defined by the LaTeX kernel. ) LaTeX Info: Writing file `./qmriIR.bib'. (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.sty (/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-dm.def) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-bibtex.def Package biblatex Warning: Using fall-back bibtex backend: (biblatex) functionality may be reduced/unavailable. ) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.def) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx (/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/standard.bbx)) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/cbx/authoryear.cbx) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.cfg) (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-case-expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty))) (/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex/Sweave .sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)) No file IRMRI-Example.aux. (/usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx) No file IRMRI-Example.bbl. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/grfext/grfext.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) ! LaTeX Error: File `IRMRI-Example-concordance.tex' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: tex) Enter file name: ! Emergency stop. <read *> l.54 \input{IRMRI-Example-concordance} ^^M ! ==> Fatal error occurred, no output PDF file produced! Transcript written on IRMRI-Example.log. make[1]: *** [Makefile:3: all] Error 1 make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qMRI.Rcheck/vign_test/qMRI/vignettes' Error in tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/qMRI.Rcheck/vign_test/qMRI", : running 'make' failed Execution halted Flavor: r-devel-linux-x86_64-debian-clang