CRAN Package Check Results for Package pkgload

Last updated on 2025-04-26 20:50:41 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.4.0	6.00	105.95	111.95	OK
r-devel-linux-x86_64-debian-gcc	1.4.0	3.81	71.96	75.77	OK
r-devel-linux-x86_64-fedora-clang	1.4.0			178.79	OK
r-devel-linux-x86_64-fedora-gcc	1.4.0			283.67	OK
r-devel-windows-x86_64	1.4.0	8.00	106.00	114.00	OK
r-patched-linux-x86_64	1.4.0	6.56	98.60	105.16	OK
r-release-linux-x86_64	1.4.0	6.06	98.73	104.79	OK
r-release-macos-arm64	1.4.0			173.00	ERROR
r-release-macos-x86_64	1.4.0			214.00	OK
r-release-windows-x86_64	1.4.0	7.00	103.00	110.00	OK
r-oldrel-macos-arm64	1.4.0			88.00	OK
r-oldrel-macos-x86_64	1.4.0			196.00	OK
r-oldrel-windows-x86_64	1.4.0	9.00	126.00	135.00	OK

Check Details

Version: 1.4.0
Check: tests
Result: ERROR Running ‘testthat.R’ [103s/146s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pkgload) > > # Needed so that install.packages works correctly > Sys.setenv("R_TESTS" = "") > > test_check("pkgload") Starting 2 test processes [ FAIL 1 | WARN 0 | SKIP 15 | PASS 344 ] ══ Skipped tests (15) ══════════════════════════════════════════════════════════ • "pkgload" %in% dev_packages() is not TRUE (1): 'test-shim.R:126:3' • On CRAN (14): 'test-depend.R:5:3', 'test-depend.R:15:3', 'test-depend.R:43:3', 'test-load-hooks.R:155:3', 'test-load.R:44:3', 'test-namespace.R:140:3', 'test-shim.R:59:3', 'test-shim.R:135:3', 'test-source.R:2:3', 'test-help.R:57:3', 'test-help.R:117:3', 'test-help.R:128:3', 'test-help.R:141:3', 'test-help.R:162:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-help.R:48:3'): shim_question behaves like util::? for searches ── shim_question(`?`(lm)) (`actual`) not identical to utils::`?`(`?`(lm)) (`expected`). attr(actual$matches, 'row.names')[18948:19009] vs attr(expected$matches, 'row.names')[18948:18950] 18948 18949 18950 - 18951 - 18952 - 18953 - 18954 - 18955 - 18956 - 18957 and 52 more ... actual$matches vs expected$matches Topic Title Name ID Package LibPath Type Field Entry actual$matches[4021, ] eight_elman the original SNNS eight elman example, using the RSNNS high-level api (rsnns) eight_elman 4917/86 RSNNS /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSNNS demo Title the original SNNS eight elman example, using the RSNNS high-level api (rsnns) actual$matches[4022, ] eight_elmanSnnsR the original SNNS eight elman example, using the RSNNS low-level api (SnnsR) eight_elmanSnnsR 4917/87 RSNNS /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSNNS demo alias eight_elmanSnnsR actual$matches[4023, ] eight_elmanSnnsR the original SNNS eight elman example, using the RSNNS low-level api (SnnsR) eight_elmanSnnsR 4917/87 RSNNS /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSNNS demo Title the original SNNS eight elman example, using the RSNNS low-level api (SnnsR) - actual$matches[4024, ] LogisticRegressionFast Logistic Regression implementation that uses R's glm LogisticRegressionFast 4920/23 RSSL /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSSL help Title Logistic Regression implementation that uses R's glm + expected$matches[4024, ] LogisticRegressionFast Logistic Regression implementation that uses R's glm LogisticRegressionFast 4921/23 RSSL /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RSSL help Title Logistic Regression implementation that uses R's glm - actual$matches[4025, ] CalculateLModeCCFI Calculates L-Mode CCFI CalculateLModeCCFI 4952/10 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias CalculateLModeCCFI + expected$matches[4025, ] CalculateLModeCCFI Calculates L-Mode CCFI CalculateLModeCCFI 4953/10 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias CalculateLModeCCFI - actual$matches[4026, ] EstimateLMode Estimates L-Mode base rate EstimateLMode 4952/26 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias EstimateLMode + expected$matches[4026, ] EstimateLMode Estimates L-Mode base rate EstimateLMode 4953/26 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias EstimateLMode - actual$matches[4027, ] RunLMode Performs L-Mode RunLMode 4952/37 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias RunLMode + expected$matches[4027, ] RunLMode Performs L-Mode RunLMode 4953/37 RTaxometrics /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RTaxometrics help alias RunLMode - actual$matches[4028, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4957/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clm + expected$matches[4028, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4958/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clm - actual$matches[4029, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4957/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clmm + expected$matches[4029, ] Anova.clm Anova Tables for Cumulative Link (Mixed) Models Anova.clm 4958/1 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help alias Anova.clmm - actual$matches[4030, ] logis.noise Creating a nls model for logistic regression from fitted values of a glm model logis.noise 4957/66 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help Title Creating a nls model for logistic regression from fitted values of a glm model + expected$matches[4030, ] logis.noise Creating a nls model for logistic regression from fitted values of a glm model logis.noise 4958/66 RVAideMemoire /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RVAideMemoire help Title Creating a nls model for logistic regression from fitted values of a glm model and 1491 more ... actual$matches vs expected$matches Topic Title Name ID Package LibPath Type Field Entry actual$matches[11790, ] lmboot-package Bootstrap in Linear Models lmboot-package 13967/4 lmboot /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmboot help alias lmboot actual$matches[11791, ] lmds Landmark MDS lmds 13968/2 lmds /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds help alias lmds actual$matches[11792, ] lmds Landmark MDS lmds 13968/2 lmds /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds help alias lmds-package - actual$matches[11793, ] confint.merMod Compute Confidence Intervals for Parameters of a [ng]lmer Fit confint.merMod 13969/17 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help Title Compute Confidence Intervals for Parameters of a [ng]lmer Fit + expected$matches[11793, ] getMME Build the mixed model equations from a lmebreed object getMME 13969/27 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help Title Build the mixed model equations from a lmebreed object - actual$matches[11794, ] glmFamily-class Class '"glmFamily"' - a reference class for 'family' glmFamily-class 13969/29 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help alias glmFamily-class + expected$matches[11794, ] lme4breeding *L*inear *m*ixed *e*quations *4* *B*reeding lme4breeding-package 13969/30 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias lme4breeding - actual$matches[11795, ] glmFamily-class Class '"glmFamily"' - a reference class for 'family' glmFamily-class 13969/29 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help Title Class '"glmFamily"' - a reference class for 'family' + expected$matches[11795, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias lmebreed-class - actual$matches[11796, ] glmFamily Generator object for the 'glmFamily' class glmFamily 13969/30 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help alias glmFamily + expected$matches[11796, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias fitted,lmebreed-method - actual$matches[11797, ] glmFamily Generator object for the 'glmFamily' class glmFamily 13969/30 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help Title Generator object for the 'glmFamily' class + expected$matches[11797, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias ranef,lmebreed-method - actual$matches[11798, ] glmer Fitting Generalized Linear Mixed-Effects Models glmer 13969/31 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help alias glmer + expected$matches[11798, ] lmebreed-class Relationship-based mixed-effects model fits lmebreed-class 13969/31 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias residuals,lmebreed-method - actual$matches[11799, ] glmer Fitting Generalized Linear Mixed-Effects Models glmer 13969/31 lme4 /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4 help concept GLMM + expected$matches[11799, ] lmebreed Fit mixed-effects models incorporating relationships lmebreed 13969/32 lme4breeding /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4breeding help alias lmebreed and 7210 more ... actual$matches$Topic | expected$matches$Topic [11790] "lmboot-package" | "lmboot-package" [11790] [11791] "lmds" | "lmds" [11791] [11792] "lmds" | "lmds" [11792] [11793] "confint.merMod" - [11794] "glmFamily-class" - [11795] "glmFamily-class" - [11796] "glmFamily" - [11797] "glmFamily" - [11798] "glmer" - [11799] "glmer" - ... ... ... and 55 more ... actual$matches$Title[11790:11854] vs expected$matches$Title[11790:11795] "Bootstrap in Linear Models" "Landmark MDS" "Landmark MDS" - "Compute Confidence Intervals for Parameters of a [ng]lmer Fit" - "Class '\"glmFamily\"' - a reference class for 'family'" - "Class '\"glmFamily\"' - a reference class for 'family'" - "Generator object for the 'glmFamily' class" - "Generator object for the 'glmFamily' class" - "Fitting Generalized Linear Mixed-Effects Models" - "Fitting Generalized Linear Mixed-Effects Models" and 55 more ... actual$matches$Name | expected$matches$Name [11790] "lmboot-package" | "lmboot-package" [11790] [11791] "lmds" | "lmds" [11791] [11792] "lmds" | "lmds" [11792] [11793] "confint.merMod" - [11794] "glmFamily-class" - [11795] "glmFamily-class" - [11796] "glmFamily" - [11797] "glmFamily" - [11798] "glmer" - [11799] "glmer" - ... ... ... and 55 more ... actual$matches$ID | expected$matches$ID [4021] "4917/86" | "4917/86" [4021] [4022] "4917/87" | "4917/87" [4022] [4023] "4917/87" | "4917/87" [4023] [4024] "4920/23" - "4921/23" [4024] [4025] "4952/10" - "4953/10" [4025] [4026] "4952/26" - "4953/26" [4026] [4027] "4952/37" - "4953/37" [4027] [4028] "4957/1" - "4958/1" [4028] [4029] "4957/1" - "4958/1" [4029] [4030] "4957/66" - "4958/66" [4030] ... ... ... and 1491 more ... actual$matches$ID | expected$matches$ID [11790] "13967/4" | "13967/4" [11790] [11791] "13968/2" | "13968/2" [11791] [11792] "13968/2" | "13968/2" [11792] [11793] "13969/17" - "13969/27" [11793] [11794] "13969/29" - "13969/30" [11794] [11795] "13969/29" - "13969/31" [11795] [11796] "13969/30" - "13969/31" [11796] [11797] "13969/30" - "13969/31" [11797] [11798] "13969/31" | "13969/31" [11798] [11799] "13969/31" - "13969/32" [11799] ... ... ... and 7210 more ... actual$matches$Package | expected$matches$Package [11790] "lmboot" | "lmboot" [11790] [11791] "lmds" | "lmds" [11791] [11792] "lmds" | "lmds" [11792] [11793] "lme4" - [11794] "lme4" - [11795] "lme4" - [11796] "lme4" - [11797] "lme4" - [11798] "lme4" - [11799] "lme4" - ... ... ... and 55 more ... actual$matches$LibPath[11790:11854] vs expected$matches$LibPath[11790:11795] "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmboot" "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds" "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lmds" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" - "/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/lme4" and 55 more ... actual$matches$Type | expected$matches$Type [11797] "help" | "help" [11797] [11798] "help" | "help" [11798] [11799] "help" | "help" [11799] [11800] "help" - [11801] "help" - [11802] "help" - [11803] "help" - [11804] "help" - [11805] "help" - [11806] "help" - ... ... ... and 55 more ... actual$matches$Field | expected$matches$Field [11792] "alias" | "alias" [11792] [11793] "Title" | "Title" [11793] [11794] "alias" | "alias" [11794] [11795] "Title" - [11796] "alias" - [11797] "Title" - [11798] "alias" - [11799] "concept" - [11800] "alias" | "alias" [11795] [11801] "concept" - ... ... ... and 56 more ... actual$matches$Field | expected$matches$Field [11861] "alias" | "alias" [11820] [11862] "Title" | "Title" [11821] [11863] "alias" | "alias" [11822] [11864] "Title" - [11865] "alias" | "alias" [11823] [11866] "Title" - [11867] "Title" - [11868] "alias" | "alias" [11824] [11869] "alias" | "alias" [11825] [11870] "alias" | "alias" [11826] ... ... ... and 20 more ... actual$matches$Entry[11790:11854] vs expected$matches$Entry[11790:11795] "lmboot" "lmds" "lmds-package" - "Compute Confidence Intervals for Parameters of a [ng]lmer Fit" - "glmFamily-class" - "Class '\"glmFamily\"' - a reference class for 'family'" - "glmFamily" - "Generator object for the 'glmFamily' class" - "glmer" - "GLMM" and 55 more ... [ FAIL 1 | WARN 0 | SKIP 15 | PASS 344 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64