Last updated on 2024-05-02 11:51:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 29.62 | 532.55 | 562.17 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 21.61 | 391.00 | 412.61 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 690.74 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 682.00 | NOTE | |||
| r-devel-windows-x86_64 | 0.2.1 | 23.00 | 428.00 | 451.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.1 | 25.33 | 508.86 | 534.19 | NOTE | |
| r-release-linux-x86_64 | 0.2.1 | 26.89 | 511.72 | 538.61 | NOTE | |
| r-release-macos-arm64 | 0.2.1 | 184.00 | NOTE | |||
| r-release-windows-x86_64 | 0.2.1 | 23.00 | 412.00 | 435.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.2.1 | 195.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.1 | 337.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.2.1 | 32.00 | 502.00 | 534.00 | NOTE |
Version: 0.2.1
Check: Rd files
Result: NOTE
checkRd: (-1) dcatState1Alive1Dead.Rd:58: Lost braces; missing escapes or markup?
58 | If z_{i,t} = 1, individual i can be recruited (transition to state 2) with probability prob1To2_t, so z_{i,t+1} ~ dcat(1- prob1To2_t, prob1To2_t, 0,0 , 0) where prob1To2_t represent the probability of an unborn individual to be recruited.
| ^
checkRd: (-1) dcatState1Alive1Dead.Rd:58: Lost braces; missing escapes or markup?
58 | If z_{i,t} = 1, individual i can be recruited (transition to state 2) with probability prob1To2_t, so z_{i,t+1} ~ dcat(1- prob1To2_t, prob1To2_t, 0,0 , 0) where prob1To2_t represent the probability of an unborn individual to be recruited.
| ^
checkRd: (-1) dcatState1Alive1Dead.Rd:59: Lost braces; missing escapes or markup?
59 | If z_{i,t} = 2, individual i can die and transition to z_{i,t+1}=3 with probability prob2To3, or survive with probability 1-prob2To3
| ^
checkRd: (-1) dcatState1Alive1Dead.Rd:59: Lost braces; missing escapes or markup?
59 | If z_{i,t} = 2, individual i can die and transition to z_{i,t+1}=3 with probability prob2To3, or survive with probability 1-prob2To3
| ^
checkRd: (-1) dcatState1Alive1Dead.Rd:60: Lost braces; missing escapes or markup?
60 | Individuals in dead states (z_{i,t} = 3 ) remain in that state with probability 1, the absorbing state.
| ^
checkRd: (-1) dcatState1Alive1Dead.Rd:32: Lost braces; missing escapes or markup?
32 | \item{x}{Scalar, individual state z_{i,t+1}.}
| ^
checkRd: (-1) dcatState1Alive1Dead.Rd:34: Lost braces; missing escapes or markup?
34 | \item{z}{Scalar, initial individual state z_{i,t}.}
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:68: Lost braces; missing escapes or markup?
68 | If z_{i,t} = 1, individual i can be recruited (transition to state 2) with probability prob1To2_t, so z_{i,t+1} ~ dcat(1- prob1To2_t, prob1To2_t, 0,0 , 0) where prob1To2_t represent the probability of an unborn individual to be recruited.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:68: Lost braces; missing escapes or markup?
68 | If z_{i,t} = 1, individual i can be recruited (transition to state 2) with probability prob1To2_t, so z_{i,t+1} ~ dcat(1- prob1To2_t, prob1To2_t, 0,0 , 0) where prob1To2_t represent the probability of an unborn individual to be recruited.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:69: Lost braces; missing escapes or markup?
69 | If z_{i,t} = 2, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=3 with probability prob2To3, or die from another cause with probability prob2To4 z_{i,t+1}=4.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:69: Lost braces; missing escapes or markup?
69 | If z_{i,t} = 2, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=3 with probability prob2To3, or die from another cause with probability prob2To4 z_{i,t+1}=4.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:69: Lost braces; missing escapes or markup?
69 | If z_{i,t} = 2, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=3 with probability prob2To3, or die from another cause with probability prob2To4 z_{i,t+1}=4.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:71: Lost braces; missing escapes or markup?
71 | Individuals in dead states (z_{i,t} = 3 or 4) transition to z_{i,t+1} = 4, the absorbing state, with probability 1.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:71: Lost braces; missing escapes or markup?
71 | Individuals in dead states (z_{i,t} = 3 or 4) transition to z_{i,t+1} = 4, the absorbing state, with probability 1.
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:36: Lost braces; missing escapes or markup?
36 | \item{x}{Scalar, individual state z_{i,t+1}.}
| ^
checkRd: (-1) dcatState1Alive2Dead.Rd:38: Lost braces; missing escapes or markup?
38 | \item{z}{Scalar, initial individual state z_{i,t}.}
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:92: Lost braces; missing escapes or markup?
92 | If z_{i,t} = 1, individual i can be recruited (transition to state 2) with probability prob1To2_t, so z_{i,t+1} ~ dcat(1- prob1To2_t, prob1To2_t, 0,0 , 0) where prob1To2_t represent the probability of an unborn individual to be recruited.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:92: Lost braces; missing escapes or markup?
92 | If z_{i,t} = 1, individual i can be recruited (transition to state 2) with probability prob1To2_t, so z_{i,t+1} ~ dcat(1- prob1To2_t, prob1To2_t, 0,0 , 0) where prob1To2_t represent the probability of an unborn individual to be recruited.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:93: Lost braces; missing escapes or markup?
93 | If z_{i,t} = 2, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=4 with probability prob2To4, or die from another cause with probability prob2To5 z_{i,t+1}=5.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:93: Lost braces; missing escapes or markup?
93 | If z_{i,t} = 2, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=4 with probability prob2To4, or die from another cause with probability prob2To5 z_{i,t+1}=5.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:93: Lost braces; missing escapes or markup?
93 | If z_{i,t} = 2, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=4 with probability prob2To4, or die from another cause with probability prob2To5 z_{i,t+1}=5.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:94: Lost braces; missing escapes or markup?
94 | If the individual does not die (1-(prob2To4+prob2To5)), it can either transition to the second state alive (z_{i,t+1}=3) with probability prob2To3 or remain in the first state alive (z_{i,t+1}=2) with probability (1-prob2To3).
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:94: Lost braces; missing escapes or markup?
94 | If the individual does not die (1-(prob2To4+prob2To5)), it can either transition to the second state alive (z_{i,t+1}=3) with probability prob2To3 or remain in the first state alive (z_{i,t+1}=2) with probability (1-prob2To3).
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:95: Lost braces; missing escapes or markup?
95 | If z_{i,t} = 3, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=4 with probability prob3To4, or die from another cause with probability prob3To5 z_{i,t+1}=5.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:95: Lost braces; missing escapes or markup?
95 | If z_{i,t} = 3, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=4 with probability prob3To4, or die from another cause with probability prob3To5 z_{i,t+1}=5.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:95: Lost braces; missing escapes or markup?
95 | If z_{i,t} = 3, individual i can die from one cause of mortality (e.g. culling) and transition to z_{i,t+1}=4 with probability prob3To4, or die from another cause with probability prob3To5 z_{i,t+1}=5.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:97: Lost braces; missing escapes or markup?
97 | Individuals in dead states (z_{i,t} = 4 or 5) transition to z_{i,t+1} = 5, the absorbing state, with probability 1.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:97: Lost braces; missing escapes or markup?
97 | Individuals in dead states (z_{i,t} = 4 or 5) transition to z_{i,t+1} = 5, the absorbing state, with probability 1.
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:48: Lost braces; missing escapes or markup?
48 | \item{x}{Scalar, individual state z_{i,t+1}.}
| ^
checkRd: (-1) dcatState2Alive2Dead.Rd:50: Lost braces; missing escapes or markup?
50 | \item{z}{Scalar, initial individual state z_{i,t}.}
| ^
checkRd: (-1) dpoisppLocalDetection_normal.Rd:148-152: Lost braces
148 | for(i in 1:nrow(x)){
| ^
checkRd: (-1) sampler_categorical_general.Rd:19: Lost braces
19 | The \code{categorical_general} sampler operates within \code{nimble}'s MCMC engine to perform Gibbs sampling for a single node, which must in essence follow a categorical distribution. However, the prior distribution need not be \code{nimble}'s \code{dcat} distribution, but rather can be any (potentially user-defined) distribution which has the same support as a standard categorical (\code{dcat}) distribution. Specifically: the distribution must define a discrete random variable, which can only attain values from the set {1, 2, 3, ..., \code{numCategories}}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.2.1
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 4.0Mb
extdata 1.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.