Last updated on 2026-02-28 11:49:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 10.27 | 102.52 | 112.79 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 7.30 | 71.71 | 79.01 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 18.00 | 150.79 | 168.79 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 17.00 | 154.83 | 171.83 | ERROR | |
| r-devel-macos-arm64 | 0.1.2 | 3.00 | 31.00 | 34.00 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 11.00 | 101.00 | 112.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.2 | 10.18 | 89.71 | 99.89 | ERROR | |
| r-release-linux-x86_64 | 0.1.2 | 9.98 | 88.49 | 98.47 | ERROR | |
| r-release-macos-arm64 | 0.1.2 | OK | ||||
| r-release-macos-x86_64 | 0.1.2 | 5.00 | 92.00 | 97.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 11.00 | 99.00 | 110.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.2 | 5.00 | 100.00 | 105.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.2 | 14.00 | 125.00 | 139.00 | ERROR |
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
>
> ### ** Examples
>
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
▆
1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
2. └─ggseg::ggseg(...)
3. └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
4. └─lifecycle:::deprecate_stop0(msg)
5. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown
Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
▆
1. └─neuroimaGene::neuro_vis(...)
2. ├─data.table::as.data.table(...)
3. ├─base::merge(...)
4. ├─data.table::merge.data.table(...)
5. │ └─data.table::is.data.table(y)
6. └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’
SUMMARY: processing the following file failed:
‘neuroimaGene.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘neuroimaGene-Ex.R’ failed
The error most likely occurred in:
> ### Name: neuro_vis
> ### Title: 2D visualization plot of a neuroimaGene object
> ### Aliases: neuro_vis
> ### Keywords: neuroimaging
>
> ### ** Examples
>
> gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
> ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
> neuro_vis(ng, atlas = 'DKT')
Error:
! `ggseg()` was deprecated in ggseg 2.0.0 and is now defunct.
ℹ Please use `ggplot() + geom_brain()` instead.
Backtrace:
▆
1. └─neuroimaGene::neuro_vis(ng, atlas = "DKT")
2. └─ggseg::ggseg(...)
3. └─lifecycle::deprecate_stop("2.0.0", "ggseg()", details = "Please use `ggplot() + geom_brain()` instead.")
4. └─lifecycle:::deprecate_stop0(msg)
5. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘neuroimaGene.Rmd’ using rmarkdown
Quitting from neuroimaGene.Rmd:230-235 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `eval(parse(text = fs))$data`:
! object of type 'closure' is not subsettable
---
Backtrace:
▆
1. └─neuroimaGene::neuro_vis(...)
2. ├─data.table::as.data.table(...)
3. ├─base::merge(...)
4. ├─data.table::merge.data.table(...)
5. │ └─data.table::is.data.table(y)
6. └─data.table::as.data.table(eval(parse(text = fs))$data)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'neuroimaGene.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘neuroimaGene.Rmd’
SUMMARY: processing the following file failed:
‘neuroimaGene.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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