CRAN Package Check Results for Package myTAI

Last updated on 2026-02-03 09:54:19 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.3.4	58.78	436.87	495.65	NOTE
r-devel-linux-x86_64-debian-gcc	2.3.4	31.66	377.76	409.42	NOTE
r-devel-linux-x86_64-fedora-clang	2.3.4	110.00	670.12	780.12	OK
r-devel-linux-x86_64-fedora-gcc	2.3.4	107.00	633.61	740.61	OK
r-devel-windows-x86_64	2.3.4	69.00	441.00	510.00	OK
r-patched-linux-x86_64	2.3.4	60.76	408.45	469.21	ERROR
r-release-linux-x86_64	2.3.4	54.63	414.02	468.65	OK
r-release-macos-arm64	2.3.4				OK
r-release-macos-x86_64	2.3.4	46.00	504.00	550.00	OK
r-release-windows-x86_64	2.3.4	70.00	464.00	534.00	OK
r-oldrel-macos-arm64	2.3.4				NOTE
r-oldrel-macos-x86_64	2.3.4	47.00	496.00	543.00	NOTE
r-oldrel-windows-x86_64	2.3.4	87.00	717.00	804.00	NOTE

Check Details

Version: 2.3.4
Check: relative paths in package URLs
Result: NOTE Found the following (possibly) invalid URLs: URL: ../reference/index.html From: inst/doc/myTAI.html URL: ../reference/index.html From: inst/doc/tai-gallery.html Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.3.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘myTAI.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘myTAI.Rmd’ --- re-building ‘other-strata.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘other-strata.Rmd’ --- re-building ‘phylo-expression-object.Rmd’ using rmarkdown Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘phylo-expression-object.Rmd’ --- re-building ‘phylostratigraphy.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘phylostratigraphy.Rmd’ --- re-building ‘tai-breaker.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘tai-breaker.Rmd’ --- re-building ‘tai-gallery.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘tai-gallery.Rmd’ --- re-building ‘tai-stats.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘tai-stats.Rmd’ --- re-building ‘tai-transform.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘tai-transform.Rmd’ --- re-building ‘taxonomy.Rmd’ using rmarkdown Quitting from taxonomy.Rmd:225-229 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dplyr::filter()`: ℹ In argument: `name == organism`. Caused by error: ! `..1` must be of size 1, not size 0. --- Backtrace: ▆ 1. ├─global taxonomy(organism = "Arabidopsis thaliana", db = "ncbi", output = "taxid") 2. │ ├─dplyr::select(...) 3. │ ├─dplyr::filter(tax_hierarchy, name == organism) 4. │ └─dplyr:::filter.data.frame(tax_hierarchy, name == organism) 5. │ └─dplyr:::filter_rows(.data, dots, by) 6. │ └─dplyr:::filter_eval(...) 7. │ ├─base::withCallingHandlers(...) 8. │ └─mask$eval_all_filter(dots, env_filter) 9. │ └─dplyr (local) eval() 10. └─dplyr:::dplyr_internal_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'taxonomy.Rmd' failed with diagnostics: ℹ In argument: `name == organism`. Caused by error: ! `..1` must be of size 1, not size 0. --- failed re-building ‘taxonomy.Rmd’ SUMMARY: processing the following file failed: ‘taxonomy.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 2.3.4
Check: installed package size
Result: NOTE installed size is 11.1Mb sub-directories of 1Mb or more: doc 6.1Mb libs 3.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64