CRAN Package Check Results for Package mstate

Last updated on 2025-12-28 01:48:45 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.3.3	14.66	164.06	178.72	OK
r-devel-linux-x86_64-debian-gcc	0.3.3	9.94	110.52	120.46	OK
r-devel-linux-x86_64-fedora-clang	0.3.3	24.00	246.73	270.73	OK
r-devel-linux-x86_64-fedora-gcc	0.3.3	26.00	270.05	296.05	OK
r-devel-windows-x86_64	0.3.3	18.00	157.00	175.00	ERROR
r-patched-linux-x86_64	0.3.3	14.03	144.22	158.25	OK
r-release-linux-x86_64	0.3.3	12.95	144.35	157.30	OK
r-release-macos-arm64	0.3.3				OK
r-release-macos-x86_64	0.3.3	11.00	162.00	173.00	OK
r-release-windows-x86_64	0.3.3	17.00	170.00	187.00	OK
r-oldrel-macos-arm64	0.3.3				OK
r-oldrel-macos-x86_64	0.3.3	11.00	196.00	207.00	OK
r-oldrel-windows-x86_64	0.3.3	25.00	208.00	233.00	OK

Check Details

Version: 0.3.3
Check: examples
Result: ERROR Running examples in 'mstate-Ex.R' failed The error most likely occurred in: > ### Name: plot.Cuminc > ### Title: Plot method for Cuminc objects > ### Aliases: plot.Cuminc > > ### ** Examples > > library(ggplot2) > > data("aidssi") > head(aidssi) patnr time status cause ccr5 1 1 9.106 1 AIDS WW 2 2 11.039 0 event-free WM 3 3 2.234 1 AIDS WW 4 4 9.878 2 SI WM 5 5 3.819 1 AIDS WW 6 6 6.801 1 AIDS WW > si <- aidssi > > # No grouping > cum_incid <- Cuminc( + time = "time", + status = "status", + data = si + ) > > plot( + x = cum_incid, + use.ggplot = TRUE, + conf.type = "none", + lty = 1:2, + conf.int = 0.95 + ) Error in `[.data.table`(df_long, , `:=`(CI_low = make_prob_confint(prob, : attempt access index 6/6 in VECTOR_ELT Calls: plot ... ggplot.Cuminc -> prep_Cuminc_df -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'visuals_demo.Rmd' using rmarkdown Quitting from visuals_demo.Rmd:202-205 [plot_pt_filled2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 8/8 in VECTOR_ELT --- Backtrace: ▆ 1. ├─base::plot(pt.WW, use.ggplot = TRUE) 2. └─mstate:::plot.probtrans(pt.WW, use.ggplot = TRUE) 3. └─mstate:::ggplot.probtrans(...) 4. └─mstate:::prep_probtrans_df(...) 5. ├─df_long[, `:=`(cum_probs, cumsum(prob)), by = time] 6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'visuals_demo.Rmd' failed with diagnostics: attempt access index 8/8 in VECTOR_ELT --- failed re-building 'visuals_demo.Rmd' --- re-building 'Tutorial.Rnw' using Sweave Loading required package: survival --- finished re-building 'Tutorial.Rnw' SUMMARY: processing the following file failed: 'visuals_demo.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64