Last updated on 2025-12-04 09:49:59 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.69 | 765.78 | 803.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.88 | 496.55 | 520.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 198.00 | 1148.48 | 1346.48 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 176.00 | 1136.63 | 1312.63 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 557.00 | 594.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.79 | 696.73 | 749.52 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.92 | 705.86 | 739.78 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 37.00 | 531.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 515.00 | 554.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 9.00 | 116.00 | 125.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 23.00 | 461.00 | 484.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 56.00 | 640.00 | 696.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [13m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-12-03 20:30:52.178844: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:52.188225: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:52.241396: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:52.3382: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:52.63962: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:52.640393: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:52.673667: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:52.73436: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:52.852686: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:52.853773: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:52.93476: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:53.094272: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:53.09641: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:53.223601: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:53.232458: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:53.319694: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:53.494901: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:53.503531: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:53.847005: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:53.847743: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:53.937428: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:54.430068: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:54.57678: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:54.57794: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:54.807348: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:56.204557: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:56.226136: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:57.125875: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:57.126669: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:57.162276: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:57.230187: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:57.375948: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:57.376974: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:57.452791: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:57.696058: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:57.709529: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:58.093506: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:58.094303: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:58.113741: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:58.145293: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:58.236962: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:58.240657: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:58.34573: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:58.412291: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:58.416551: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:58.74213: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:58.742924: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:58.770496: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:58.850435: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:59.035268: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:59.038904: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:59.095923: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:59.262424: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:59.271001: DONE
> test_pipeop_isomap.R: 2025-12-03 20:31:00.081115: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:00.087914: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:00.112966: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:00.195289: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:00.43192: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:31:00.433025: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:00.511669: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:00.681612: embedding
> test_pipeop_isomap.R: 2025-12-03 20:31:00.688634: DONE
> test_pipeop_isomap.R: 2025-12-03 20:31:01.035443: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:01.036204: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:01.06221: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:01.148698: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:01.372226: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:31:01.373302: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:01.446755: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:01.601827: embedding
> test_pipeop_isomap.R: 2025-12-03 20:31:01.609045: DONE
> test_pipeop_isomap.R: 2025-12-03 20:31:01.889582: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:01.890339: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:01.978638: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:02.013733: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:02.193271: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:02.19405: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:02.224538: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:02.290909: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:02.374123: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:02.381299: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:02.410511: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:02.470767: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.9110593')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [427s/210s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-11-29 16:11:02.279489: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.28023: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.289827: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.309264: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.367778: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.368258: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.377531: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.397061: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.458491: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.459182: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.47361: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.517176: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:02.518342: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:02.541654: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.542128: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.555725: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.600298: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:02.601701: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:02.681252: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.68175: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.699243: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.803264: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.836262: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.836912: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.870789: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.07982: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.097722: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.239251: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.239693: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.24714: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.266608: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.2969: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.297562: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.31355: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.354947: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.356141: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.489363: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.489792: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.498733: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.517413: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.562348: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.564548: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.579281: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.621957: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.623067: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.71452: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.714961: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.724657: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.74558: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.787524: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.788173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.801627: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.848686: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.849905: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.922364: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.92283: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.930304: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.948301: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.995377: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.996032: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.010417: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.053577: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:04.054799: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:04.130713: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.131173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.152408: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.171641: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.218403: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.219074: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.235689: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.279585: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:04.280857: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:04.365453: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.365898: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.373423: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.392494: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.471998: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.472474: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.479881: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.498398: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.520849: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.521299: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.528664: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.547723: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean absolute difference: Inf')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-04 21:21:43.350652: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.350897: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.354229: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.360529: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.370626: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.37075: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.373056: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.379101: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.385337: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.3855: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.389974: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.404531: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.404916: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.409786: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.409904: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.414354: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.429104: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.429488: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.449684: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.449808: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.454256: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.488216: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.505171: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.505433: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.513915: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.592134: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.593228: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.623041: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.623174: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.625464: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.631611: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.637797: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.637952: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.642294: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.657348: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.657781: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.685337: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.685464: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.687825: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.694046: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.704173: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.704348: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.708858: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.724409: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.724816: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.74156: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.741681: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.749052: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.755235: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.764761: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.764917: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.768931: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.783867: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.784236: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.799671: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.799785: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.802014: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.808013: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.818691: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.818914: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.823245: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.837969: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.838417: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.853345: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.853465: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.855508: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.861322: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.870209: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.870367: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.874433: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.888764: embedding
> test_pipeop_isomap.R: 2025-12-04 21:21:43.889168: DONE
> test_pipeop_isomap.R: 2025-12-04 21:21:43.907257: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.907377: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.90966: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.915756: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.931458: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.931587: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.938652: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.944716: Classical Scaling
> test_pipeop_isomap.R: 2025-12-04 21:21:43.94971: Isomap START
> test_pipeop_isomap.R: 2025-12-04 21:21:43.949825: constructing knn graph
> test_pipeop_isomap.R: 2025-12-04 21:21:43.951945: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-04 21:21:43.957946: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [298s/167s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-03 19:42:17.265106: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.265626: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.274172: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.290063: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:17.323892: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.324197: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.330701: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.35587: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:17.372746: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.373136: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.385204: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.420632: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:17.421627: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:17.435625: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.43591: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.447997: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.483841: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:17.484858: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:17.535204: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.535474: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.547939: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.634198: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:17.656774: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.657165: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.681686: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.859152: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:17.862509: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:17.951882: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.952164: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:17.958985: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:17.974548: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:17.99261: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:17.993013: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.016442: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.052187: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:18.053278: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:18.136689: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.136953: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.143118: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.158888: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:18.186322: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.186811: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.199444: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.23609: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:18.237113: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:18.28182: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.282086: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.288026: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.303892: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:18.33146: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.331882: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.344712: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.381435: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:18.382468: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:18.428518: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.428797: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.435061: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.450855: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:18.489854: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.490283: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.502704: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.538995: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:18.540105: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:18.583866: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.584134: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.590469: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.606148: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:18.633318: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.633744: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.646231: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.681866: embedding
> test_pipeop_isomap.R: 2025-12-03 19:42:18.682926: DONE
> test_pipeop_isomap.R: 2025-12-03 19:42:18.734007: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.734279: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.740579: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.756689: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:18.805613: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.805898: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.812085: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.827682: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 19:42:18.841781: Isomap START
> test_pipeop_isomap.R: 2025-12-03 19:42:18.842046: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 19:42:18.84817: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 19:42:18.864327: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.7063527')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [271s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-03 07:49:34.738483: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:34.739772: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:34.756991: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:34.781754: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:34.836241: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:34.836712: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:34.849756: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:34.872652: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:34.912184: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:34.912881: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:34.933486: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:34.979266: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:34.981055: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:35.017149: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:35.017801: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:35.039285: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:35.085649: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:35.087735: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:35.184101: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:35.184597: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:35.206273: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:35.31923: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:35.371415: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:35.372355: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:35.415965: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:35.654412: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:35.660577: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:35.886191: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:35.886681: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:35.893404: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:35.908429: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:35.94901: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:35.949932: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:35.970127: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.008837: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:36.010052: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:36.214329: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:36.215187: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:36.227005: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.250467: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:36.3189: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:36.319846: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:36.34026: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.39161: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:36.393239: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:36.487943: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:36.48839: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:36.495891: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.510985: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:36.571832: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:36.57279: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:36.595851: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.638371: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:36.639598: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:36.738397: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:36.738862: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:36.74719: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.769688: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:36.838483: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:36.839403: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:36.863499: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:36.9138: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:36.915724: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:37.017242: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:37.017901: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:37.029592: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:37.052432: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:37.114938: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 07:49:37.115643: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:37.138581: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:37.184485: embedding
> test_pipeop_isomap.R: 2025-12-03 07:49:37.185944: DONE
> test_pipeop_isomap.R: 2025-12-03 07:49:37.296081: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:37.296707: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:37.30812: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:37.323819: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:37.414298: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:37.414938: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:37.427452: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:37.449536: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 07:49:37.484132: Isomap START
> test_pipeop_isomap.R: 2025-12-03 07:49:37.484774: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 07:49:37.512381: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 07:49:37.534499: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.4369892')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
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