Last updated on 2025-04-02 20:52:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.5 | 286.14 | 485.83 | 771.97 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.5 | 193.91 | 323.30 | 517.21 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.5 | 1301.68 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.5 | 1319.40 | ERROR | |||
| r-devel-macos-arm64 | 1.3.5 | 385.00 | OK | |||
| r-devel-macos-x86_64 | 1.3.5 | 673.00 | OK | |||
| r-devel-windows-x86_64 | 1.3.5 | 291.00 | 513.00 | 804.00 | OK | |
| r-patched-linux-x86_64 | 1.3.5 | 289.50 | 474.64 | 764.14 | OK | |
| r-release-linux-x86_64 | 1.3.5 | 271.67 | 469.72 | 741.39 | OK | |
| r-release-macos-arm64 | 1.3.5 | 321.00 | NOTE | |||
| r-release-macos-x86_64 | 1.3.5 | 645.00 | NOTE | |||
| r-release-windows-x86_64 | 1.3.5 | 269.00 | 497.00 | 766.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.3.5 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.3.5 | 602.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.3.5 | 343.00 | 654.00 | 997.00 | NOTE |
Version: 1.3.5
Check: examples
Result: ERROR
Running examples in ‘mets-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: drelevel
> ### Title: relev levels for data frames
> ### Aliases: drelevel dlevels dlevel dlev drelev dlev<- dlevel<- drelev<-
> ### drelevel<- dfactor dfactor<- dnumeric dnumeric<-
>
> ### ** Examples
>
>
> data(mena)
> dstr(mena)
'data.frame': 2000 obs. of 7 variables:
$ cohort : Factor w/ 4 levels "[1973,1975]",..: 1 1 1 1 1 1 1 1 1 1 ...
$ agemena : num 13.8 12.7 12.4 13.1 13.5 ...
$ status : int 1 1 1 1 1 1 1 1 1 1 ...
$ zyg : Factor w/ 2 levels "MZ","DZ": 2 2 1 1 1 1 1 1 1 1 ...
$ twinnum : int 2 1 2 1 2 1 2 1 2 1 ...
$ id : num 1 1 2 2 3 3 4 4 5 5 ...
$ mothermena: num 13.5 13.5 12.5 12.5 14.7 ...
Error in structure(res, ngroupvar = 0, class = c("daggregate", class(res))) :
attempt to set an attribute on NULL
Calls: dstr -> daggregate -> structure
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘basic-dutils.Rmd’ using rmarkdown
Quitting from basic-dutils.Rmd:190-193 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `structure()`:
! attempt to set an attribute on NULL
---
Backtrace:
▆
1. └─mets::dstr(melanoma)
2. └─mets::daggregate(...)
3. └─base::structure(res, ngroupvar = 0, class = c("daggregate", class(res)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'basic-dutils.Rmd' failed with diagnostics:
attempt to set an attribute on NULL
--- failed re-building ‘basic-dutils.Rmd’
--- re-building ‘binomial-family.Rmd’ using rmarkdown
--- finished re-building ‘binomial-family.Rmd’
--- re-building ‘binomial-twin.Rmd’ using rmarkdown
--- finished re-building ‘binomial-twin.Rmd’
--- re-building ‘binreg-TRS.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/binreg-TRS_files/figure-html/unnamed-chunk-4-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33394 bytes
Input file size = 33520 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27541
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27541
Output IDAT size = 27541 bytes (5853 bytes decrease)
Output file size = 27619 bytes (5901 bytes = 17.60% decrease)
--- finished re-building ‘binreg-TRS.Rmd’
--- re-building ‘binreg-ate.Rmd’ using rmarkdown
--- finished re-building ‘binreg-ate.Rmd’
--- re-building ‘binreg.Rmd’ using rmarkdown
--- finished re-building ‘binreg.Rmd’
--- re-building ‘cifreg.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29464 bytes
Input file size = 29578 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24398
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24398
Output IDAT size = 24398 bytes (5066 bytes decrease)
Output file size = 24476 bytes (5102 bytes = 17.25% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-4-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17177 bytes
Input file size = 17279 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13514
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13514
Output IDAT size = 13514 bytes (3663 bytes decrease)
Output file size = 13592 bytes (3687 bytes = 21.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cifreg_files/figure-html/unnamed-chunk-6-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17762 bytes
Input file size = 17864 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14313
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14313
Output IDAT size = 14313 bytes (3449 bytes decrease)
Output file size = 14391 bytes (3473 bytes = 19.44% decrease)
--- finished re-building ‘cifreg.Rmd’
--- re-building ‘cooking-survival-data.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-4-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12416 bytes
Input file size = 12506 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10086
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10086
Output IDAT size = 10086 bytes (2330 bytes decrease)
Output file size = 10164 bytes (2342 bytes = 18.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-5-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19044 bytes
Input file size = 19146 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13453
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13453
Output IDAT size = 13453 bytes (5591 bytes decrease)
Output file size = 13531 bytes (5615 bytes = 29.33% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-6-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8766 bytes
Input file size = 8856 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6621
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6621
Output IDAT size = 6621 bytes (2145 bytes decrease)
Output file size = 6699 bytes (2157 bytes = 24.36% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-6-2.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14183 bytes
Input file size = 14273 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10058
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10058
Output IDAT size = 10058 bytes (4125 bytes decrease)
Output file size = 10136 bytes (4137 bytes = 28.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-8-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13535 bytes
Input file size = 13625 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10680
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10680
Output IDAT size = 10680 bytes (2855 bytes decrease)
Output file size = 10758 bytes (2867 bytes = 21.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-8-2.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16226 bytes
Input file size = 16316 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12366
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12366
Output IDAT size = 12366 bytes (3860 bytes decrease)
Output file size = 12444 bytes (3872 bytes = 23.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 22317 bytes
Input file size = 22419 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17405
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17405
Output IDAT size = 17405 bytes (4912 bytes decrease)
Output file size = 17483 bytes (4936 bytes = 22.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-10-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21800 bytes
Input file size = 21902 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17162
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17162
Output IDAT size = 17162 bytes (4638 bytes decrease)
Output file size = 17240 bytes (4662 bytes = 21.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-11-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24118 bytes
Input file size = 24220 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18156
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18156
Output IDAT size = 18156 bytes (5962 bytes decrease)
Output file size = 18234 bytes (5986 bytes = 24.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-12-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12968 bytes
Input file size = 13058 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10314
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10314
Output IDAT size = 10314 bytes (2654 bytes decrease)
Output file size = 10392 bytes (2666 bytes = 20.42% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-14-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7657 bytes
Input file size = 7735 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6380
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6380
Output IDAT size = 6380 bytes (1277 bytes decrease)
Output file size = 6458 bytes (1277 bytes = 16.51% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-14-2.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 7442 bytes
Input file size = 7520 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5944
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5944
Output IDAT size = 5944 bytes (1498 bytes decrease)
Output file size = 6022 bytes (1498 bytes = 19.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/cooking-survival-data_files/figure-html/unnamed-chunk-14-3.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16221 bytes
Input file size = 16311 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12751
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12751
Output IDAT size = 12751 bytes (3470 bytes decrease)
Output file size = 12829 bytes (3482 bytes = 21.35% decrease)
--- finished re-building ‘cooking-survival-data.Rmd’
--- re-building ‘glm-utility.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/glm-utility_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26142 bytes
Input file size = 26256 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21135
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21135
Output IDAT size = 21135 bytes (5007 bytes decrease)
Output file size = 21213 bytes (5043 bytes = 19.21% decrease)
--- finished re-building ‘glm-utility.Rmd’
--- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown
--- finished re-building ‘haplo-discrete-ttp.Rmd’
--- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/interval-discrete-survival_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 8 bits/pixel, 253 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5459 bytes
Input file size = 6308 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4417
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4417
Output IDAT size = 4417 bytes (1042 bytes decrease)
Output file size = 4495 bytes (1813 bytes = 28.74% decrease)
--- finished re-building ‘interval-discrete-survival.Rmd’
--- re-building ‘marginal-cox.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-5-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9374 bytes
Input file size = 9464 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7026
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7026
Output IDAT size = 7026 bytes (2348 bytes decrease)
Output file size = 7104 bytes (2360 bytes = 24.94% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-6-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11740 bytes
Input file size = 11830 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8587
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8587
Output IDAT size = 8587 bytes (3153 bytes decrease)
Output file size = 8665 bytes (3165 bytes = 26.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/marginal-cox_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 60657 bytes
Input file size = 60819 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53824
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 53824
Output IDAT size = 53824 bytes (6833 bytes decrease)
Output file size = 53902 bytes (6917 bytes = 11.37% decrease)
--- finished re-building ‘marginal-cox.Rmd’
--- re-building ‘mediation-survival.Rmd’ using rmarkdown
--- finished re-building ‘mediation-survival.Rmd’
--- re-building ‘phreg_rct.Rmd’ using rmarkdown
--- finished re-building ‘phreg_rct.Rmd’
--- re-building ‘quantitative-twin.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/scatter1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 44960 bytes
Input file size = 45098 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36542
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36542
Output IDAT size = 36542 bytes (8418 bytes decrease)
Output file size = 36620 bytes (8478 bytes = 18.80% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/scatter2-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52082 bytes
Input file size = 52232 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40796
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40796
Output IDAT size = 40796 bytes (11286 bytes decrease)
Output file size = 40874 bytes (11358 bytes = 21.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/quantitative-twin_files/figure-html/marg1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10244 bytes
Input file size = 10334 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7524
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7524
Output IDAT size = 7524 bytes (2720 bytes decrease)
Output file size = 7602 bytes (2732 bytes = 26.44% decrease)
--- finished re-building ‘quantitative-twin.Rmd’
--- re-building ‘recurrent-events.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-4-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14712 bytes
Input file size = 14802 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11850
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11850
Output IDAT size = 11850 bytes (2862 bytes decrease)
Output file size = 11928 bytes (2874 bytes = 19.42% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-6-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18914 bytes
Input file size = 19016 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15347
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15347
Output IDAT size = 15347 bytes (3567 bytes decrease)
Output file size = 15425 bytes (3591 bytes = 18.88% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-7-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15318 bytes
Input file size = 15408 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12587
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12587
Output IDAT size = 12587 bytes (2731 bytes decrease)
Output file size = 12665 bytes (2743 bytes = 17.80% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-8-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19911 bytes
Input file size = 20013 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15268
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15268
Output IDAT size = 15268 bytes (4643 bytes decrease)
Output file size = 15346 bytes (4667 bytes = 23.32% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-9-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8497 bytes
Input file size = 8587 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6707
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6707
Output IDAT size = 6707 bytes (1790 bytes decrease)
Output file size = 6785 bytes (1802 bytes = 20.99% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-11-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12817 bytes
Input file size = 12907 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10187
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10187
Output IDAT size = 10187 bytes (2630 bytes decrease)
Output file size = 10265 bytes (2642 bytes = 20.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-14-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11458 bytes
Input file size = 11548 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9121
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9121
Output IDAT size = 9121 bytes (2337 bytes decrease)
Output file size = 9199 bytes (2349 bytes = 20.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-19-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10897 bytes
Input file size = 10987 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8793
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8793
Output IDAT size = 8793 bytes (2104 bytes decrease)
Output file size = 8871 bytes (2116 bytes = 19.26% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-21-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15891 bytes
Input file size = 15981 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10840
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10840
Output IDAT size = 10840 bytes (5051 bytes decrease)
Output file size = 10918 bytes (5063 bytes = 31.68% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-22-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8014 bytes
Input file size = 8092 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6490
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6490
Output IDAT size = 6490 bytes (1524 bytes decrease)
Output file size = 6568 bytes (1524 bytes = 18.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-23-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27625 bytes
Input file size = 27739 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19869
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19869
Output IDAT size = 19869 bytes (7756 bytes decrease)
Output file size = 19947 bytes (7792 bytes = 28.09% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-24-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18534 bytes
Input file size = 18636 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14954
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14954
Output IDAT size = 14954 bytes (3580 bytes decrease)
Output file size = 15032 bytes (3604 bytes = 19.34% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-26-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11732 bytes
Input file size = 11822 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8714
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8714
Output IDAT size = 8714 bytes (3018 bytes decrease)
Output file size = 8792 bytes (3030 bytes = 25.63% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/recurrent-events_files/figure-html/unnamed-chunk-27-1.png
350x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20137 bytes
Input file size = 20239 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16853
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16853
Output IDAT size = 16853 bytes (3284 bytes decrease)
Output file size = 16931 bytes (3308 bytes = 16.34% decrease)
--- finished re-building ‘recurrent-events.Rmd’
--- re-building ‘rmst-ate.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/rmst-ate_files/figure-html/unnamed-chunk-2-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54310 bytes
Input file size = 54460 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46862
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46862
Output IDAT size = 46862 bytes (7448 bytes decrease)
Output file size = 46940 bytes (7520 bytes = 13.81% decrease)
--- finished re-building ‘rmst-ate.Rmd’
--- re-building ‘survival-ate.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/survival-ate_files/figure-html/unnamed-chunk-2-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14473 bytes
Input file size = 14563 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12368
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12368
Output IDAT size = 12368 bytes (2105 bytes decrease)
Output file size = 12446 bytes (2117 bytes = 14.54% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/survival-ate_files/figure-html/unnamed-chunk-3-1.png
686x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17439 bytes
Input file size = 17541 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14038
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14038
Output IDAT size = 14038 bytes (3401 bytes decrease)
Output file size = 14116 bytes (3425 bytes = 19.53% decrease)
--- finished re-building ‘survival-ate.Rmd’
--- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/survival-marginal-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13873 bytes
Input file size = 13963 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10313
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10313
Output IDAT size = 10313 bytes (3560 bytes decrease)
Output file size = 10391 bytes (3572 bytes = 25.58% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14731 bytes
Input file size = 14821 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11198
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11198
Output IDAT size = 11198 bytes (3533 bytes decrease)
Output file size = 11276 bytes (3545 bytes = 23.92% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-9-1.png
357x275 pixels, 8 bits/pixel, 251 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5480 bytes
Input file size = 6323 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4899
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4899
Output IDAT size = 4899 bytes (581 bytes decrease)
Output file size = 4977 bytes (1346 bytes = 21.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance2-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16107 bytes
Input file size = 16197 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12228
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12228
Output IDAT size = 12228 bytes (3879 bytes decrease)
Output file size = 12306 bytes (3891 bytes = 24.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/concordance3-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17124 bytes
Input file size = 17226 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13176
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13176
Output IDAT size = 13176 bytes (3948 bytes decrease)
Output file size = 13254 bytes (3972 bytes = 23.06% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-17-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8823 bytes
Input file size = 8913 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6840
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6840
Output IDAT size = 6840 bytes (1983 bytes decrease)
Output file size = 6918 bytes (1995 bytes = 22.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/biprobittime1-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12350 bytes
Input file size = 12440 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9619
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9619
Output IDAT size = 9619 bytes (2731 bytes decrease)
Output file size = 9697 bytes (2743 bytes = 22.05% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-1.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8476 bytes
Input file size = 8566 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6389
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6389
Output IDAT size = 6389 bytes (2087 bytes decrease)
Output file size = 6467 bytes (2099 bytes = 24.50% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-2.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8821 bytes
Input file size = 8911 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6793
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6793
Output IDAT size = 6793 bytes (2028 bytes decrease)
Output file size = 6871 bytes (2040 bytes = 22.89% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-3.png
357x275 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8623 bytes
Input file size = 8713 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6395
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6395
Output IDAT size = 6395 bytes (2228 bytes decrease)
Output file size = 6473 bytes (2240 bytes = 25.71% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/mets.Rcheck/vign_test/mets/vignettes/time-to-event-family-studies-arev_files/figure-html/unnamed-chunk-19-4.png
357x275 pixels, 8 bits/pixel, 213 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 2385 bytes
Input file size = 3114 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1993
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1993
Output IDAT size = 1993 bytes (392 bytes decrease)
Output file size = 2071 bytes (1043 bytes = 33.49% decrease)
--- finished re-building ‘time-to-event-family-studies-arev.Rmd’
--- re-building ‘twostage-survival.Rmd’ using rmarkdown
--- finished re-building ‘twostage-survival.Rmd’
--- re-building ‘while-alive.Rmd’ using rmarkdown
--- finished re-building ‘while-alive.Rmd’
SUMMARY: processing the following file failed:
‘basic-dutils.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.5
Check: examples
Result: ERROR
Running examples in ‘mets-Ex.R’ failed
The error most likely occurred in:
> ### Name: drelevel
> ### Title: relev levels for data frames
> ### Aliases: drelevel dlevels dlevel dlev drelev dlev<- dlevel<- drelev<-
> ### drelevel<- dfactor dfactor<- dnumeric dnumeric<-
>
> ### ** Examples
>
>
> data(mena)
> dstr(mena)
'data.frame': 2000 obs. of 7 variables:
$ cohort : Factor w/ 4 levels "[1973,1975]",..: 1 1 1 1 1 1 1 1 1 1 ...
$ agemena : num 13.8 12.7 12.4 13.1 13.5 ...
$ status : int 1 1 1 1 1 1 1 1 1 1 ...
$ zyg : Factor w/ 2 levels "MZ","DZ": 2 2 1 1 1 1 1 1 1 1 ...
$ twinnum : int 2 1 2 1 2 1 2 1 2 1 ...
$ id : num 1 1 2 2 3 3 4 4 5 5 ...
$ mothermena: num 13.5 13.5 12.5 12.5 14.7 ...
Error in structure(res, ngroupvar = 0, class = c("daggregate", class(res))) :
attempt to set an attribute on NULL
Calls: dstr -> daggregate -> structure
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘basic-dutils.Rmd’ using rmarkdown
Quitting from basic-dutils.Rmd:190-193 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `structure()`:
! attempt to set an attribute on NULL
---
Backtrace:
▆
1. └─mets::dstr(melanoma)
2. └─mets::daggregate(...)
3. └─base::structure(res, ngroupvar = 0, class = c("daggregate", class(res)))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'basic-dutils.Rmd' failed with diagnostics:
attempt to set an attribute on NULL
--- failed re-building ‘basic-dutils.Rmd’
--- re-building ‘binomial-family.Rmd’ using rmarkdown
--- finished re-building ‘binomial-family.Rmd’
--- re-building ‘binomial-twin.Rmd’ using rmarkdown
--- finished re-building ‘binomial-twin.Rmd’
--- re-building ‘binreg-TRS.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
--- finished re-building ‘binreg-TRS.Rmd’
--- re-building ‘binreg-ate.Rmd’ using rmarkdown
--- finished re-building ‘binreg-ate.Rmd’
--- re-building ‘binreg.Rmd’ using rmarkdown
--- finished re-building ‘binreg.Rmd’
--- re-building ‘cifreg.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘cifreg.Rmd’
--- re-building ‘cooking-survival-data.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘cooking-survival-data.Rmd’
--- re-building ‘glm-utility.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
--- finished re-building ‘glm-utility.Rmd’
--- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown
--- finished re-building ‘haplo-discrete-ttp.Rmd’
--- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
--- finished re-building ‘interval-discrete-survival.Rmd’
--- re-building ‘marginal-cox.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘marginal-cox.Rmd’
--- re-building ‘mediation-survival.Rmd’ using rmarkdown
--- finished re-building ‘mediation-survival.Rmd’
--- re-building ‘phreg_rct.Rmd’ using rmarkdown
--- finished re-building ‘phreg_rct.Rmd’
--- re-building ‘quantitative-twin.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘quantitative-twin.Rmd’
--- re-building ‘recurrent-events.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘recurrent-events.Rmd’
--- re-building ‘rmst-ate.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
--- finished re-building ‘rmst-ate.Rmd’
--- re-building ‘survival-ate.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘survival-ate.Rmd’
--- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
Using optipng is skipped as output is variable
--- finished re-building ‘time-to-event-family-studies-arev.Rmd’
--- re-building ‘twostage-survival.Rmd’ using rmarkdown
--- finished re-building ‘twostage-survival.Rmd’
--- re-building ‘while-alive.Rmd’ using rmarkdown
--- finished re-building ‘while-alive.Rmd’
SUMMARY: processing the following file failed:
‘basic-dutils.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.5
Check: installed package size
Result: NOTE
installed size is 29.0Mb
sub-directories of 1Mb or more:
R 2.0Mb
doc 3.6Mb
libs 21.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.