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Last updated on 2026-06-12 17:53:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.9 | 33.92 | 204.42 | 238.34 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.9 | 24.36 | 135.91 | 160.27 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.9 | 56.00 | 311.43 | 367.43 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.9 | 75.00 | 354.53 | 429.53 | ERROR | |
| r-devel-windows-x86_64 | 0.3.9 | 39.00 | 261.00 | 300.00 | ERROR | |
| r-patched-linux-x86_64 | 0.3.9 | 39.40 | 187.51 | 226.91 | OK | |
| r-release-linux-x86_64 | 0.3.9 | 34.18 | 188.47 | 222.65 | OK | |
| r-release-macos-arm64 | 0.3.9 | 8.00 | 47.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.9 | 23.00 | 200.00 | 223.00 | OK | |
| r-release-windows-x86_64 | 0.3.9 | 41.00 | 252.00 | 293.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.9 | 7.00 | 47.00 | 54.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.9 | 26.00 | 218.00 | 244.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.9 | 53.00 | 317.00 | 370.00 | OK |
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [37s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> suppressPackageStartupMessages(library(metacoder))
>
> test_check("metacoder")
Saving _problems/test--calculations-155.R
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test--parsers_and_writers.R:104:3',
'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3',
'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--calculations.R:153:3'): Comparing groups of samples ───────────
Error in `if (p < 0.99999) 1 - p else F(z, lower.tail = FALSE)`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─metacoder::compare_groups(...) at test--calculations.R:153:3
2. └─base::lapply(...)
3. └─metacoder (local) FUN(X[[i]], ...)
4. └─metacoder (local) one_comparison(combinations[[i]][1], combinations[[i]][2])
5. └─base::lapply(...)
6. └─metacoder (local) FUN(X[[i]], ...)
7. ├─base::as.list(func(abund_1, abund_2))
8. └─metacoder (local) func(abund_1, abund_2)
9. ├─stats::wilcox.test(abund_1, abund_2, exact = FALSE)
10. └─stats:::wilcox.test.default(abund_1, abund_2, exact = FALSE)
11. └─stats:::.wilcox_test_two_pval_asymp(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> suppressPackageStartupMessages(library(metacoder))
>
> test_check("metacoder")
Saving _problems/test--calculations-155.R
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test--parsers_and_writers.R:104:3',
'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3',
'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--calculations.R:153:3'): Comparing groups of samples ───────────
Error in `if (p < 0.99999) 1 - p else F(z, lower.tail = FALSE)`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─metacoder::compare_groups(...) at test--calculations.R:153:3
2. └─base::lapply(...)
3. └─metacoder (local) FUN(X[[i]], ...)
4. └─metacoder (local) one_comparison(combinations[[i]][1], combinations[[i]][2])
5. └─base::lapply(...)
6. └─metacoder (local) FUN(X[[i]], ...)
7. ├─base::as.list(func(abund_1, abund_2))
8. └─metacoder (local) func(abund_1, abund_2)
9. ├─stats::wilcox.test(abund_1, abund_2, exact = FALSE)
10. └─stats:::wilcox.test.default(abund_1, abund_2, exact = FALSE)
11. └─stats:::.wilcox_test_two_pval_asymp(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [59s/71s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> suppressPackageStartupMessages(library(metacoder))
>
> test_check("metacoder")
Saving _problems/test--calculations-155.R
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test--parsers_and_writers.R:104:3',
'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3',
'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--calculations.R:153:3'): Comparing groups of samples ───────────
Error in `if (p < 0.99999) 1 - p else F(z, lower.tail = FALSE)`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─metacoder::compare_groups(...) at test--calculations.R:153:3
2. └─base::lapply(...)
3. └─metacoder (local) FUN(X[[i]], ...)
4. └─metacoder (local) one_comparison(combinations[[i]][1], combinations[[i]][2])
5. └─base::lapply(...)
6. └─metacoder (local) FUN(X[[i]], ...)
7. ├─base::as.list(func(abund_1, abund_2))
8. └─metacoder (local) func(abund_1, abund_2)
9. ├─stats::wilcox.test(abund_1, abund_2, exact = FALSE)
10. └─stats:::wilcox.test.default(abund_1, abund_2, exact = FALSE)
11. └─stats:::.wilcox_test_two_pval_asymp(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘testthat.R’ [68s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> suppressPackageStartupMessages(library(metacoder))
>
> test_check("metacoder")
Saving _problems/test--calculations-155.R
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test--parsers_and_writers.R:104:3',
'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3',
'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--calculations.R:153:3'): Comparing groups of samples ───────────
Error in `if (p < 0.99999) 1 - p else F(z, lower.tail = FALSE)`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─metacoder::compare_groups(...) at test--calculations.R:153:3
2. └─base::lapply(...)
3. └─metacoder (local) FUN(X[[i]], ...)
4. └─metacoder (local) one_comparison(combinations[[i]][1], combinations[[i]][2])
5. └─base::lapply(...)
6. └─metacoder (local) FUN(X[[i]], ...)
7. ├─base::as.list(func(abund_1, abund_2))
8. └─metacoder (local) func(abund_1, abund_2)
9. ├─stats::wilcox.test(abund_1, abund_2, exact = FALSE)
10. └─stats:::wilcox.test.default(abund_1, abund_2, exact = FALSE)
11. └─stats:::.wilcox_test_two_pval_asymp(...)
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 530 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.9
Check: tests
Result: ERROR
Running 'testthat.R' [32s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
>
> suppressPackageStartupMessages(library(metacoder))
>
> test_check("metacoder")
Saving _problems/test--calculations-155.R
[ FAIL 1 | WARN 1 | SKIP 5 | PASS 530 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test--parsers_and_writers.R:104:3',
'test--parsers_and_writers.R:203:3', 'test--simulated_pcr.R:19:3',
'test--taxmap_parsers.R:139:3', 'test--taxmap_parsers.R:288:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test--calculations.R:153:3'): Comparing groups of samples ───────────
Error in `if (p < 0.99999) 1 - p else F(z, lower.tail = FALSE)`: missing value where TRUE/FALSE needed
Backtrace:
▆
1. └─metacoder::compare_groups(...) at test--calculations.R:153:3
2. └─base::lapply(...)
3. └─metacoder (local) FUN(X[[i]], ...)
4. └─metacoder (local) one_comparison(combinations[[i]][1], combinations[[i]][2])
5. └─base::lapply(...)
6. └─metacoder (local) FUN(X[[i]], ...)
7. ├─base::as.list(func(abund_1, abund_2))
8. └─metacoder (local) func(abund_1, abund_2)
9. ├─stats::wilcox.test(abund_1, abund_2, exact = FALSE)
10. └─stats:::wilcox.test.default(abund_1, abund_2, exact = FALSE)
11. └─stats:::.wilcox_test_two_pval_asymp(...)
[ FAIL 1 | WARN 1 | SKIP 5 | PASS 530 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
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