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Last updated on 2026-08-13 05:51:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | OK | |||||
| r-devel-linux-x86_64-debian-gcc | 1.6.2 | 8.48 | 90.94 | 99.42 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.6.2 | 93.49 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.6.2 | 9.00 | 86.58 | 95.58 | OK | |
| r-devel-windows-x86_64 | 1.6.2 | 18.00 | 131.00 | 149.00 | OK | |
| r-patched-linux-x86_64 | 1.6.2 | 14.97 | 115.21 | 130.18 | OK | |
| r-release-linux-x86_64 | 1.6.2 | 12.39 | 111.75 | 124.14 | OK | |
| r-release-macos-arm64 | 1.6.2 | 3.00 | 34.00 | 37.00 | OK | |
| r-release-macos-x86_64 | 1.6.2 | 9.00 | 121.00 | 130.00 | OK | |
| r-release-windows-x86_64 | 1.6.2 | 14.00 | 121.00 | 135.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.6.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.6.2 | 8.00 | 109.00 | 117.00 | OK | |
| r-oldrel-windows-x86_64 | 1.6.2 | 22.00 | 160.00 | 182.00 | OK |
Version: 1.6.2
Check: tests
Result: ERROR
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(metabodecon)
>
> test_check("metabodecon")
Starting 2 test processes.
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.15 Starting deconvolution of 1 spectrum using 1 worker
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.15 Starting deconvolution of sap_01
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.15 Removing water signal
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.15 Removing negative signals
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Smoothing signals
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Starting peak selection
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Detected 24 peaks
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Detected 24 peaks
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Removing peaks with low scores
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Removed 20 peaks
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.16 Initializing Lorentz curves
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.17 MSE at peak tiplet positions: 0.0000023352180995647374
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.17 Refining Lorentz Curves
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.17 MSE at peak tiplet positions: 0.0000000822818617368644
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.18 MSE at peak tiplet positions: 0.0000000163050712082374
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.18 MSE at peak tiplet positions: 0.0000000069366441759494
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.18 Formatting return object as decon1
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.19 Finished deconvolution of sap_01
> test-generate_lorentz_curves.R: 2026-08-07 15:56:45.19 Finished deconvolution of 1 spectrum in 0.038 secs
> test-as_decon.R: 2026-08-07 15:56:48.18 Starting deconvolution of sap_01
> test-as_decon.R: 2026-08-07 15:56:48.18 Removing water signal
> test-as_decon.R: 2026-08-07 15:56:48.18 Removing negative signals
> test-as_decon.R: 2026-08-07 15:56:48.19
> test-as_decon.R: Smoothing signals
> test-as_decon.R: 2026-08-07 15:56:48.19 Starting peak selection
> test-as_decon.R: 2026-08-07 15:56:48.19 Detected 18 peaks
> test-as_decon.R: 2026-08-07 15:56:48.19 Detected 18 peaks
> test-as_decon.R: 2026-08-07 15:56:48.19 Removing peaks with low scores
> test-as_decon.R: 2026-08-07 15:56:48.19 Removed 14 peaks
> test-as_decon.R: 2026-08-07 15:56:48.19 Initializing Lorentz curves
> test-as_decon.R: 2026-08-07 15:56:48.19 MSE at peak tiplet positions: 0.0000024963648931653179
> test-as_decon.R: 2026-08-07 15:56:48.19 Refining Lorentz Curves
> test-as_decon.R: 2026-08-07 15:56:48.19 MSE at peak tiplet positions: 0.0000001165616696457351
> test-as_decon.R: 2026-08-07 15:56:48.20 MSE at peak tiplet positions: 0.0000000180892220732885
> test-as_decon.R: 2026-08-07 15:56:48.20 MSE at peak tiplet positions: 0.0000000055685735596689
> test-as_decon.R: 2026-08-07 15:56:48.20 Formatting return object as idecon
> test-as_decon.R: 2026-08-07 15:56:48.20 Finished deconvolution of sap_01
> test-as_decon.R: 2026-08-07 15:56:48.20 Starting deconvolution of sap_01 using Rust backend
> test-deconvolute.R: 2026-08-07 15:56:48.90 Starting deconvolution of 1 spectrum using 1 worker
> test-deconvolute.R: 2026-08-07 15:56:48.90 Starting deconvolution of sap_01
> test-deconvolute.R: 2026-08-07 15:56:48.91 Removing water signal
> test-deconvolute.R: 2026-08-07 15:56:48.91
> test-deconvolute.R: Removing negative signals
> test-deconvolute.R: 2026-08-07 15:56:48.91 Smoothing signals
> test-deconvolute.R: 2026-08-07 15:56:48.91 Starting peak selection
> test-deconvolute.R: 2026-08-07 15:56:48.91 Detected 24 peaks
> test-deconvolute.R: 2026-08-07 15:56:48.91 Detected 24 peaks
> test-deconvolute.R: 2026-08-07 15:56:48.91 Removing peaks with low scores
> test-deconvolute.R: 2026-08-07 15:56:48.91 Removed 20 peaks
> test-deconvolute.R: 2026-08-07 15:56:48.91 Initializing Lorentz curves
> test-deconvolute.R: 2026-08-07 15:56:48.92 MSE at peak tiplet positions: 0.0000023352180995647374
> test-deconvolute.R: 2026-08-07 15:56:48.92 Refining Lorentz Curves
> test-deconvolute.R: 2026-08-07 15:56:48.92 MSE at peak tiplet positions: 0.0000000822818617368644
> test-deconvolute.R: 2026-08-07 15:56:48.93 MSE at peak tiplet positions: 0.0000000163050712082374
> test-deconvolute.R: 2026-08-07 15:56:48.93 MSE at peak tiplet positions: 0.0000000069366441759494
> test-deconvolute.R: 2026-08-07 15:56:48.94 Formatting return object as decon2
> test-deconvolute.R: 2026-08-07 15:56:48.94 Finished deconvolution of sap_01
> test-deconvolute.R: 2026-08-07 15:56:48.94 Finished deconvolution of 1 spectrum in 0.034 secs
> test-deconvolute.R: 2026-08-07 15:56:48.97 Starting deconvolution of 2 spectra using 1 worker
> test-deconvolute.R: 2026-08-07 15:56:48.97 Starting deconvolution of sim_01
> test-deconvolute.R: 2026-08-07 15:56:48.97 Removing water signal
> test-deconvolute.R: 2026-08-07 15:56:48.97 Removing negative signals
> test-deconvolute.R: 2026-08-07 15:56:48.97 Smoothing signals
> test-deconvolute.R: 2026-08-07 15:56:48.98 Starting peak selection
> test-deconvolute.R: 2026-08-07 15:56:48.98 Detected 314 peaks
> test-deconvolute.R: 2026-08-07 15:56:48.98 Detected 314 peaks
> test-deconvolute.R: 2026-08-07 15:56:48.98 Removing peaks with low scores
> test-deconvolute.R: 2026-08-07 15:56:48.98 Removed 287 peaks
> test-deconvolute.R: 2026-08-07 15:56:48.98 Initializing Lorentz curves
> test-deconvolute.R: 2026-08-07 15:56:48.98 MSE at peak tiplet positions: 4.0838805770844048836921
> test-deconvolute.R: 2026-08-07 15:56:48.99 Refining Lorentz Curves
> test-deconvolute.R: 2026-08-07 15:56:48.99 MSE at peak tiplet positions: 0.1609359876216345797140
> test-deconvolute.R: 2026-08-07 15:56:48.99 MSE at peak tiplet positions: 0.0228015051613790278862
> test-deconvolute.R: 2026-08-07 15:56:48.99 MSE at peak tiplet positions: 0.0071638016610617982066
> test-deconvolute.R: 2026-08-07 15:56:48.99 Formatting return object as decon2
> test-deconvolute.R: 2026-08-07 15:56:49.00 Finished deconvolution of sim_01
> test-deconvolute.R: 2026-08-07 15:56:49.00 Starting deconvolution of sim_02
> test-deconvolute.R: 2026-08-07 15:56:49.01 Removing water signal
> test-deconvolute.R: 2026-08-07 15:56:49.01 Removing negative signals
> test-deconvolute.R: 2026-08-07 15:56:49.01 Smoothing signals
> test-deconvolute.R: 2026-08-07 15:56:49.02 Starting peak selection
> test-deconvolute.R: 2026-08-07 15:56:49.02 Detected 316 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.02 Detected 316 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.02 Removing peaks with low scores
> test-deconvolute.R: 2026-08-07 15:56:49.02 Removed 286 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.02 Initializing Lorentz curves
> test-deconvolute.R: 2026-08-07 15:56:49.02 MSE at peak tiplet positions: 3.8338943428876719465848
> test-deconvolute.R: 2026-08-07 15:56:49.03 Refining Lorentz Curves
> test-deconvolute.R: 2026-08-07 15:56:49.03 MSE at peak tiplet positions: 0.1289481941626757499630
> test-deconvolute.R: 2026-08-07 15:56:49.04 MSE at peak tiplet positions: 0.0135651899090413925741
> test-deconvolute.R: 2026-08-07 15:56:49.04 MSE at peak tiplet positions: 0.0025556755331531126781
> test-deconvolute.R: 2026-08-07 15:56:49.04 Formatting return object as decon2
> test-deconvolute.R: 2026-08-07 15:56:49.05 Finished deconvolution of sim_02
> test-deconvolute.R: 2026-08-07 15:56:49.05 Finished deconvolution of 2 spectra in 0.08 secs
> test-deconvolute.R: 2026-08-07 15:56:49.12 Starting deconvolution of 1 spectrum using 1 worker
> test-deconvolute.R: 2026-08-07 15:56:49.12 Starting deconvolution of sim_00
> test-deconvolute.R: 2026-08-07 15:56:49.12 Removing water signal
> test-deconvolute.R: 2026-08-07 15:56:49.12 Removing negative signals
> test-deconvolute.R: 2026-08-07 15:56:49.12 Smoothing signals
> test-deconvolute.R: 2026-08-07 15:56:49.13 Starting peak selection
> test-deconvolute.R: 2026-08-07 15:56:49.13 Detected 63 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.13 Detected 63 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.13 Removing peaks with low scores
> test-deconvolute.R: 2026-08-07 15:56:49.15 Starting deconvolution of 1 spectrum using 1 worker
> test-deconvolute.R: 2026-08-07 15:56:49.15 Starting deconvolution of sim_00
> test-deconvolute.R: 2026-08-07 15:56:49.15 Removing water signal
> test-deconvolute.R: 2026-08-07 15:56:49.15 Removing negative signals
> test-deconvolute.R: 2026-08-07 15:56:49.15 Smoothing signals
> test-deconvolute.R: 2026-08-07 15:56:49.15 Starting peak selection
> test-deconvolute.R: 2026-08-07 15:56:49.15 Detected 63 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.15 Detected 63 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.15 Removing peaks with low scores
> test-deconvolute.R: 2026-08-07 15:56:49.15 Not enough signals found in signal free region. This is a clear indication that the deconvolution parameters are not set correctly. Continuing anyways without dynamic peak filtering, because `force` is TRUE. Note that this might increase runtime drastically.
> test-deconvolute.R: 2026-08-07 15:56:49.15 Removed 0 peaks
> test-deconvolute.R: 2026-08-07 15:56:49.15 Initializing Lorentz curves
> test-deconvolute.R: 2026-08-07 15:56:49.16 MSE at peak tiplet positions: 1.2776621160691832290723
> test-deconvolute.R: 2026-08-07 15:56:49.16 Refining Lorentz Curves
> test-deconvolute.R: 2026-08-07 15:56:49.16 MSE at peak tiplet positions: 0.0382680161940291765910
> test-deconvolute.R: 2026-08-07 15:56:49.17 MSE at peak tiplet positions: 0.0106273721357572573792
> test-deconvolute.R: 2026-08-07 15:56:49.18 MSE at peak tiplet positions: 0.0050118558740663400955
> test-deconvolute.R: 2026-08-07 15:56:49.18 Formatting return object as decon2
> test-deconvolute.R: 2026-08-07 15:56:49.18 Finished deconvolution of sim_00
> test-deconvolute.R: 2026-08-07 15:56:49.19 Finished deconvolution of 1 spectrum in 0.039 secs
> test-draw_spectrum.R:
Error:
! testthat subprocess exited in file 'test-draw_spectrum.R'.
Caused by error:
! R session crashed with exit code -1073741819
Backtrace:
▆
1. └─testthat::test_check("metabodecon")
2. └─testthat::test_dir(...)
3. └─testthat:::test_files(...)
4. └─testthat:::test_files_parallel(...)
5. ├─withr::with_dir(...)
6. │ └─base::force(code)
7. ├─testthat::with_reporter(...)
8. │ └─base::tryCatch(...)
9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
13. └─queue$poll(Inf)
14. └─base::lapply(...)
15. └─testthat (local) FUN(X[[i]], ...)
16. └─private$handle_error(msg, i)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-release-windows-x86_64
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