CRAN Package Check Results for Maintainer ‘Martin Jullum <Martin.Jullum at nr.no>’

Last updated on 2025-12-28 01:49:15 CET.

Package	ERROR	NOTE	OK
shapr	1	3	9

Package shapr

Current CRAN status: ERROR: 1, NOTE: 3, OK: 9

Version: 1.0.7
Check: tests
Result: ERROR Running 'testthat.R' [41s] Running the tests in 'tests/testthat.R' failed. Complete output: > # CRAN OMP THREAD LIMIT > Sys.setenv("OMP_THREAD_LIMIT" = 1) > > library(testthat) > library(shapr) Attaching package: 'shapr' The following object is masked from 'package:testthat': setup > > test_check("shapr") -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: gaussian * Procedure: Non-iterative * Number of Monte Carlo integration samples: 5 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-asymmetric-causal-setup-373.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 10 of 32 coalitions. Saving _problems/test-classes-13.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 10 of 32 coalitions. Saving _problems/test-classes-41.R Saving _problems/test-forecast-setup-221.R -- Starting `shapr::explain_forecast()` ---------------------------------------- i Feature names extracted from the model contain `NA`. Consistency checks between model and data are therefore disabled. i `max_n_coalitions` is `NULL` or larger than `2^n_features = 128`, and is therefore set to `2^n_features = 128`. -- Explanation overview -- * Model class: <Arima> * v(S) estimation class: Monte Carlo integration * Approach: empirical * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 7 * Number of observations to explain: 2 -- Main computation started -- i Using 128 of 128 coalitions. Saving _problems/test-forecast-setup-613.R -- Starting `shapr::explain_forecast()` ---------------------------------------- i Feature names extracted from the model contain `NA`. Consistency checks between model and data are therefore disabled. i `max_n_coalitions` is `NULL` or larger than `2^n_groups = 4`, and is therefore set to `2^n_groups = 4`. -- Explanation overview -- * Model class: <Arima> * v(S) estimation class: Monte Carlo integration * Approach: empirical * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of group-wise Shapley values: 2 * Number of observations to explain: 2 -- Main computation started -- i Using 4 of 4 coalitions. Saving _problems/test-forecast-setup-687.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence * Procedure: Iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Iterative computation started -- -- Iteration 1 ----------------------------------------------------------------- i Using 6 of 32 coalitions, 6 new. Saving _problems/test-iterative-setup-18.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: gaussian * Procedure: Iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Iterative computation started -- -- Iteration 1 ----------------------------------------------------------------- i Using 6 of 32 coalitions, 6 new. Saving _problems/test-iterative-setup-51.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: empirical * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-iterative-setup-200.R Saving _problems/test-iterative-setup-286.R Saving _problems/test-iterative-setup-411.R Saving _problems/test-model-classes-19.R Saving _problems/test-model-classes-43.R Saving _problems/test-model-classes-67.R Saving _problems/test-model-classes-97.R Saving _problems/test-model-classes-122.R Saving _problems/test-model-classes-148.R Saving _problems/test-model-classes-182.R Saving _problems/test-model-classes-215.R Saving _problems/test-model-classes-246.R Saving _problems/test-model-classes-277.R Saving _problems/test-model-classes-303.R Saving _problems/test-model-classes-339.R Saving _problems/test-regular-setup-51.R Saving _problems/test-regular-setup-527.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: ctree * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 10 of 32 coalitions. Saving _problems/test-regular-setup-1216.R Saving _problems/test-regular-setup-1235.R Saving _problems/test-regular-setup-1281.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: ctree * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of group-wise Shapley values: 3 * Feature groups: A: {"Solar.R", "Wind"}; B: {"Temp", "Month_factor"}; C: {"Day"} * Number of observations to explain: 3 -- Main computation started -- i Using 6 of 8 coalitions. Saving _problems/test-regular-setup-1358.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: empirical * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-regular-setup-1372.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: empirical * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-regular-setup-1421.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: gaussian * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-regular-setup-1485.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence, empirical, gaussian, and copula * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-regular-setup-1540.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence, empirical, gaussian, and copula * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-regular-setup-1570.R -- Starting `shapr::explain()` ------------------------------------------------- i `max_n_coalitions` is `NULL` or larger than `2^n_features = 32`, and is therefore set to `2^n_features = 32`. -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: gaussian * Procedure: Non-iterative * Number of Monte Carlo integration samples: 1000 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 32 of 32 coalitions. Saving _problems/test-regular-setup-1758.R Saving _problems/test-regular-setup-1805.R Saving _problems/test-regular-setup-1840.R Saving _problems/test-regular-setup-1864.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence * Procedure: Non-iterative * Number of Monte Carlo integration samples: 50 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 18 of 32 coalitions. Saving _problems/test-semi-deterministic-setup-86.R -- Starting `shapr::explain()` ------------------------------------------------- -- Explanation overview -- * Model class: <lm> * v(S) estimation class: Monte Carlo integration * Approach: independence * Procedure: Non-iterative * Number of Monte Carlo integration samples: 50 * Number of feature-wise Shapley values: 5 * Number of observations to explain: 3 -- Main computation started -- i Using 20 of 32 coalitions. Saving _problems/test-semi-deterministic-setup-115.R [ FAIL 42 | WARN 0 | SKIP 46 | PASS 2 ] ══ Skipped tests (46) ══════════════════════════════════════════════════════════ • On CRAN (44): 'test-asymmetric-causal-output.R:14:1', 'test-asymmetric-causal-setup.R:1:1', 'test-asymmetric-causal-setup.R:229:1', 'test-asymmetric-causal-setup.R:253:1', 'test-asymmetric-causal-setup.R:318:1', 'test-forecast-output.R:2:1', 'test-forecast-setup.R:3:1', 'test-forecast-setup.R:33:1', 'test-forecast-setup.R:107:1', 'test-forecast-setup.R:136:1', 'test-forecast-setup.R:225:1', 'test-forecast-setup.R:299:1', 'test-forecast-setup.R:349:1', 'test-forecast-setup.R:445:1', 'test-forecast-setup.R:518:1', 'test-iterative-output.R:1:1', 'test-iterative-setup.R:75:1', 'test-plot.R:1:1', 'test-regression-output.R:1:1', 'test-regression-setup.R:8:1', 'test-regression-setup.R:46:1', 'test-regression-setup.R:174:1', 'test-regression-setup.R:232:1', 'test-regression-setup.R:294:1', 'test-regression-setup.R:335:1', 'test-regular-output.R:1:1', 'test-regular-setup.R:1:1', 'test-regular-setup.R:118:1', 'test-regular-setup.R:236:1', 'test-regular-setup.R:259:1', 'test-regular-setup.R:317:1', 'test-regular-setup.R:554:1', 'test-regular-setup.R:677:1', 'test-regular-setup.R:792:1', 'test-regular-setup.R:813:1', 'test-regular-setup.R:871:1', 'test-regular-setup.R:929:1', 'test-regular-setup.R:1036:1', 'test-regular-setup.R:1148:1', 'test-semi-deterministic-output.R:1:1', 'test-semi-deterministic-setup.R:1:1', 'test-semi-deterministic-setup.R:22:1', 'test-semi-deterministic-setup.R:47:1', 'test-summary.R:1:1' • torch::torch_is_installed() is not TRUE (2): 'test-regular-setup.R:1628:3', 'test-regular-setup.R:1671:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-asymmetric-causal-setup.R:364:3'): cond_sym_as_NULLconfounding ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-asymmetric-causal-setup.R:364:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-classes.R:4:3'): shapr class has correct structure ───────────── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-classes.R:4:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-classes.R:32:3'): summary.shapr class has correct structure ──── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-classes.R:32:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-forecast-setup.R:197:3'): erroneous input: `max_n_coalitions` ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain_forecast(...) 2. └─shapr:::shapley_setup_forecast(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-forecast-setup.R:597:3'): ARIMA gives the same output with different horizons ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain_forecast(...) at test-forecast-setup.R:597:3 2. └─shapr:::shapley_setup_forecast(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-forecast-setup.R:671:3'): ARIMA gives the same output with different horizons with grouping ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain_forecast(...) at test-forecast-setup.R:671:3 2. └─shapr:::shapley_setup_forecast(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:2:3'): iterative_args are respected ────────── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-iterative-setup.R:2:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:38:3'): iterative feature wise and groupwise computations identical ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-iterative-setup.R:38:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:191:3'): different n_batches gives same/different shapley values for different approaches ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-iterative-setup.R:191:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:267:3'): output_lm_numeric_independence_saving_and_cont_est ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-iterative-setup.R:267:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:398:3'): output_lm_numeric_independence_keep_samp_for_vS ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─shapr:::expect_snapshot_rds(...) at test-iterative-setup.R:398:3 2. │ ├─testthat::expect_snapshot(...) 3. │ │ └─testthat:::expect_snapshot_(...) 4. │ │ ├─testthat:::with_is_snapshotting(...) 5. │ │ └─testthat:::verify_exec(quo_get_expr(x), quo_get_env(x), replay) 6. │ │ └─evaluate::evaluate(source, envir = env, new_device = FALSE, output_handler = handler) 7. │ │ ├─base::withRestarts(...) 8. │ │ │ └─base (local) withRestartList(expr, restarts) 9. │ │ │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 10. │ │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 11. │ │ │ └─base (local) withRestartList(expr, restarts[-nr]) 12. │ │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 13. │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 14. │ │ ├─evaluate:::with_handlers(...) 15. │ │ │ ├─base::eval(call) 16. │ │ │ │ └─base::eval(call) 17. │ │ │ └─base::withCallingHandlers(...) 18. │ │ ├─base::withVisible(eval(expr, envir)) 19. │ │ └─base::eval(expr, envir) 20. │ │ └─base::eval(expr, envir) 21. │ └─base::print(...) 22. └─shapr::explain(...) 23. └─shapr::shapley_setup(internal) 24. └─shapr:::create_coalition_table(...) 25. └─shapr:::sample_coalition_table(...) 26. └─shapr:::exact_coalition_table(...) 27. ├─dt[, `:=`(N, .N), coalition_size] 28. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:421:7'): output_verbose_suppressMessages ───── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-iterative-setup.R:419:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. ├─base::suppressMessages(...) at test-iterative-setup.R:420:5 10. │ └─base::withCallingHandlers(...) 11. └─shapr::explain(...) at test-iterative-setup.R:421:7 12. └─shapr::shapley_setup(internal) 13. └─shapr:::create_coalition_table(...) 14. └─shapr:::sample_coalition_table(...) 15. └─shapr:::exact_coalition_table(...) 16. ├─dt[, `:=`(N, .N), coalition_size] 17. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-iterative-setup.R:439:5'): output_verbose_NULL ───────────────── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_silent(...) at test-iterative-setup.R:438:3 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─shapr::explain(...) at test-iterative-setup.R:439:5 10. └─shapr::shapley_setup(internal) 11. └─shapr:::create_coalition_table(...) 12. └─shapr:::sample_coalition_table(...) 13. └─shapr:::exact_coalition_table(...) 14. ├─dt[, `:=`(N, .N), coalition_size] 15. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:11:3'): lm model works with explain ──────────── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:11:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:35:3'): glm model works with explain (gaussian) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:35:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:59:3'): glm model works with explain (binomial) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:59:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:85:3'): ar model works with explain_forecast ─── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain_forecast(...) at test-model-classes.R:85:3 2. └─shapr:::shapley_setup_forecast(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:114:3'): ranger model works with explain (regression) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:114:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:140:3'): ranger model works with explain (probability) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:140:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:174:3'): xgb.train model works with explain (regression) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:174:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:207:3'): xgb.train model works with explain (binary classification) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:207:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:238:3'): xgboost wrapper works with explain (regression) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:238:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:269:3'): xgboost wrapper works with explain (binary classification) ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:269:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:295:3'): mgcv gam model works with explain ───── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:295:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-model-classes.R:331:3'): workflows model works with explain ──── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-model-classes.R:331:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:38:3'): messages with missing detail in get_model_specs ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:513:3'): erroneous input: `max_n_coalitions` ─── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1207:3'): Correct dimension of S when sampling combinations ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1207:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1224:3'): Message with too low `max_n_coalitions` ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1268:3'): Shapr with `max_n_coalitions` >= 2^m uses exact Shapley kernel weights ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1348:3'): Correct dimension of S when sampling combinations with groups ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1348:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1364:3'): data feature ordering is output_lm_numeric_column_order ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1364:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1413:3'): parallelization gives same output for any approach ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1413:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1477:3'): gaussian approach use the user provided parameters ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1477:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1532:3'): setting the seed for combined approaches works ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1532:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1562:3'): counting the number of unique approaches ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1562:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1750:3'): feature wise and groupwise computations are identical ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-regular-setup.R:1750:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::exact_coalition_table(...) 5. ├─dt[, `:=`(N, .N), coalition_size] 6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1792:3'): output_custom_lm_numeric_independence_2 ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─shapr:::expect_snapshot_rds(...) at test-regular-setup.R:1792:3 2. │ ├─testthat::expect_snapshot(...) 3. │ │ └─testthat:::expect_snapshot_(...) 4. │ │ ├─testthat:::with_is_snapshotting(...) 5. │ │ └─testthat:::verify_exec(quo_get_expr(x), quo_get_env(x), replay) 6. │ │ └─evaluate::evaluate(source, envir = env, new_device = FALSE, output_handler = handler) 7. │ │ ├─base::withRestarts(...) 8. │ │ │ └─base (local) withRestartList(expr, restarts) 9. │ │ │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 10. │ │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 11. │ │ │ └─base (local) withRestartList(expr, restarts[-nr]) 12. │ │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 13. │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 14. │ │ ├─evaluate:::with_handlers(...) 15. │ │ │ ├─base::eval(call) 16. │ │ │ │ └─base::eval(call) 17. │ │ │ └─base::withCallingHandlers(...) 18. │ │ ├─base::withVisible(eval(expr, envir)) 19. │ │ └─base::eval(expr, envir) 20. │ │ └─base::eval(expr, envir) 21. │ └─base::print(...) 22. └─shapr::explain(...) 23. └─shapr::shapley_setup(internal) 24. └─shapr:::create_coalition_table(...) 25. └─shapr:::exact_coalition_table(...) 26. ├─dt[, `:=`(N, .N), coalition_size] 27. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1827:3'): output_lm_numeric_independence_keep_samp_for_vS ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─shapr:::expect_snapshot_rds(...) at test-regular-setup.R:1827:3 2. │ ├─testthat::expect_snapshot(...) 3. │ │ └─testthat:::expect_snapshot_(...) 4. │ │ ├─testthat:::with_is_snapshotting(...) 5. │ │ └─testthat:::verify_exec(quo_get_expr(x), quo_get_env(x), replay) 6. │ │ └─evaluate::evaluate(source, envir = env, new_device = FALSE, output_handler = handler) 7. │ │ ├─base::withRestarts(...) 8. │ │ │ └─base (local) withRestartList(expr, restarts) 9. │ │ │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 10. │ │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 11. │ │ │ └─base (local) withRestartList(expr, restarts[-nr]) 12. │ │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 13. │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 14. │ │ ├─evaluate:::with_handlers(...) 15. │ │ │ ├─base::eval(call) 16. │ │ │ │ └─base::eval(call) 17. │ │ │ └─base::withCallingHandlers(...) 18. │ │ ├─base::withVisible(eval(expr, envir)) 19. │ │ └─base::eval(expr, envir) 20. │ │ └─base::eval(expr, envir) 21. │ └─base::print(...) 22. └─shapr::explain(...) 23. └─shapr::shapley_setup(internal) 24. └─shapr:::create_coalition_table(...) 25. └─shapr:::exact_coalition_table(...) 26. ├─dt[, `:=`(N, .N), coalition_size] 27. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-regular-setup.R:1850:3'): output_lm_numeric_vS_batching_method ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─shapr:::expect_snapshot_rds(...) at test-regular-setup.R:1850:3 2. │ ├─testthat::expect_snapshot(...) 3. │ │ └─testthat:::expect_snapshot_(...) 4. │ │ ├─testthat:::with_is_snapshotting(...) 5. │ │ └─testthat:::verify_exec(quo_get_expr(x), quo_get_env(x), replay) 6. │ │ └─evaluate::evaluate(source, envir = env, new_device = FALSE, output_handler = handler) 7. │ │ ├─base::withRestarts(...) 8. │ │ │ └─base (local) withRestartList(expr, restarts) 9. │ │ │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 10. │ │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 11. │ │ │ └─base (local) withRestartList(expr, restarts[-nr]) 12. │ │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 13. │ │ │ └─base (local) doWithOneRestart(return(expr), restart) 14. │ │ ├─evaluate:::with_handlers(...) 15. │ │ │ ├─base::eval(call) 16. │ │ │ │ └─base::eval(call) 17. │ │ │ └─base::withCallingHandlers(...) 18. │ │ ├─base::withVisible(eval(expr, envir)) 19. │ │ └─base::eval(expr, envir) 20. │ │ └─base::eval(expr, envir) 21. │ └─base::print(...) 22. └─shapr::explain(...) 23. └─shapr::shapley_setup(internal) 24. └─shapr:::create_coalition_table(...) 25. └─shapr:::sample_coalition_table(...) 26. └─shapr:::exact_coalition_table(...) 27. ├─dt[, `:=`(N, .N), coalition_size] 28. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-semi-deterministic-setup.R:73:3'): setup_semi_determ_n_determ_sample_coal_18 ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-semi-deterministic-setup.R:73:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) ── Error ('test-semi-deterministic-setup.R:102:3'): setup_semi_determ_n_determ_sample_coal_20 ── Error in ``[.data.table`(dt, , `:=`(N, .N), coalition_size)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─shapr::explain(...) at test-semi-deterministic-setup.R:102:3 2. └─shapr::shapley_setup(internal) 3. └─shapr:::create_coalition_table(...) 4. └─shapr:::sample_coalition_table(...) 5. └─shapr:::exact_coalition_table(...) 6. ├─dt[, `:=`(N, .N), coalition_size] 7. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), coalition_size) [ FAIL 42 | WARN 0 | SKIP 46 | PASS 2 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.7
Check: installed package size
Result: NOTE installed size is 9.5Mb sub-directories of 1Mb or more: doc 4.2Mb libs 4.0Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64