CRAN Package Check Results for Maintainer ‘Yaoxiang Li <liyaoxiang at outlook.com>’

Last updated on 2025-12-17 11:51:00 CET.

Package	ERROR	NOTE	OK
cmmr			13
ggpca			13
ggvolcano			13
oglcnac			13
omicsTools	4	1	8
rconf			13
RJSONIO			13
ShinyLink	3		10

Package cmmr

Current CRAN status: OK: 13

Package ggpca

Current CRAN status: OK: 13

Package ggvolcano

Current CRAN status: OK: 13

Package oglcnac

Current CRAN status: OK: 13

Package omicsTools

Current CRAN status: ERROR: 4, NOTE: 1, OK: 8

Version: 1.0.5
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [5s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(omicsTools) This is omicsTools version 1.0.5. omicsTools is free software and comes with ABSOLUTELY NO WARRANTY. Please use at your own risk. > > test_check("omicsTools") Loading required package: shiny Saving _problems/test-golem_utils_ui-99.R Saving _problems/test-golem_utils_ui-105.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ──────────────── Expected `as.character(b)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>" ── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ─────────────── Expected `as.character(b_undisplay)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>" [ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ] Error: ! Test failures. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 1.0.5
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(omicsTools) This is omicsTools version 1.0.5. omicsTools is free software and comes with ABSOLUTELY NO WARRANTY. Please use at your own risk. > > test_check("omicsTools") Loading required package: shiny Saving _problems/test-golem_utils_ui-99.R Saving _problems/test-golem_utils_ui-105.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ──────────────── Expected `as.character(b)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>" ── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ─────────────── Expected `as.character(b_undisplay)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>" [ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.5
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [4s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(omicsTools) This is omicsTools version 1.0.5. omicsTools is free software and comes with ABSOLUTELY NO WARRANTY. Please use at your own risk. > > test_check("omicsTools") Loading required package: shiny Saving _problems/test-golem_utils_ui-99.R Saving _problems/test-golem_utils_ui-105.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ──────────────── Expected `as.character(b)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>" ── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ─────────────── Expected `as.character(b_undisplay)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>" [ FAIL 2 | WARN 0 | SKIP 1 | PASS 94 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 1.1.7
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘pvca’ Flavor: r-oldrel-macos-arm64

Package rconf

Current CRAN status: OK: 13

Package RJSONIO

Current CRAN status: OK: 13

Package ShinyLink

Current CRAN status: ERROR: 3, OK: 10

Version: 0.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [10s/13s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ShinyLink) > > test_check("ShinyLink") Loading required package: shiny Saving _problems/test-golem_utils_ui-99.R Saving _problems/test-golem_utils_ui-105.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ──────────────── Expected `as.character(b)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>" ── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ─────────────── Expected `as.character(b_undisplay)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>" [ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [9s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ShinyLink) > > test_check("ShinyLink") Loading required package: shiny Saving _problems/test-golem_utils_ui-99.R Saving _problems/test-golem_utils_ui-105.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ──────────────── Expected `as.character(b)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>" ── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ─────────────── Expected `as.character(b_undisplay)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>" [ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [9s/13s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ShinyLink) > > test_check("ShinyLink") Loading required package: shiny Saving _problems/test-golem_utils_ui-99.R Saving _problems/test-golem_utils_ui-105.R [ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-golem-recommended.R:72:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-golem_utils_ui.R:96:3'): Test undisplay works ──────────────── Expected `as.character(b)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\">go</button>" ── Failure ('test-golem_utils_ui.R:102:3'): Test undisplay works ─────────────── Expected `as.character(b_undisplay)` to equal "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>". Differences: lines(actual) vs lines(expected) - "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">" - " <span class=\"action-label\">go</span>" - "</button>" + "<button id=\"go_filter\" type=\"button\" class=\"btn btn-default action-button\" style=\"display: none;\">go</button>" [ FAIL 2 | WARN 0 | SKIP 1 | PASS 145 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64