Last updated on 2025-10-10 13:50:03 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
dowser | 5 | 1 | 7 |
Current CRAN status: ERROR: 5, NOTE: 1, OK: 7
Version: 2.3
Check: examples
Result: ERROR
Running examples in ‘dowser-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in .call_fun_in_pwalign("pairwiseAlignment", ...) :
pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
formally defunct in Biostrings >= 2.77.1. Please call
pwalign::pairwiseAlignment() to get rid of this error.
Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.3
Check: examples
Result: ERROR
Running examples in ‘dowser-Ex.R’ failed
The error most likely occurred in:
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in .call_fun_in_pwalign("pairwiseAlignment", ...) :
pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
formally defunct in Biostrings >= 2.77.1. Please call
pwalign::pairwiseAlignment() to get rid of this error.
Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pwalign’
Flavor: r-oldrel-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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