CRAN Package Check Results for Package dowser

Last updated on 2025-10-10 09:50:28 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3 51.38 622.74 674.12 ERROR
r-devel-linux-x86_64-debian-gcc 2.3 35.71 443.49 479.20 ERROR
r-devel-linux-x86_64-fedora-clang 2.3 1058.52 ERROR
r-devel-linux-x86_64-fedora-gcc 2.3 1084.31 ERROR
r-devel-windows-x86_64 2.3 55.00 617.00 672.00 ERROR
r-patched-linux-x86_64 2.3 56.66 592.90 649.56 OK
r-release-linux-x86_64 2.3 47.36 591.96 639.32 OK
r-release-macos-arm64 2.3 271.00 OK
r-release-macos-x86_64 2.3 516.00 OK
r-release-windows-x86_64 2.3 51.00 615.00 666.00 OK
r-oldrel-macos-arm64 2.3 196.00 OK
r-oldrel-macos-x86_64 2.3 315.00 NOTE
r-oldrel-windows-x86_64 2.3 72.00 776.00 848.00 OK

Check Details

Version: 2.3
Check: examples
Result: ERROR Running examples in ‘dowser-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: maskCodons > ### Title: 'maskCodons' Masks codons split by insertions > ### Aliases: maskCodons > > ### ** Examples > > s = "ATCATCATC..." > q = "ATCTTTATCATC" > print(maskCodons(1,q,s,TRUE)) Error in .call_fun_in_pwalign("pairwiseAlignment", ...) : pairwiseAlignment() has moved from Biostrings to the pwalign package, and is formally defunct in Biostrings >= 2.77.1. Please call pwalign::pairwiseAlignment() to get rid of this error. Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.3
Check: examples
Result: ERROR Running examples in ‘dowser-Ex.R’ failed The error most likely occurred in: > ### Name: maskCodons > ### Title: 'maskCodons' Masks codons split by insertions > ### Aliases: maskCodons > > ### ** Examples > > s = "ATCATCATC..." > q = "ATCTTTATCATC" > print(maskCodons(1,q,s,TRUE)) Error in .call_fun_in_pwalign("pairwiseAlignment", ...) : pairwiseAlignment() has moved from Biostrings to the pwalign package, and is formally defunct in Biostrings >= 2.77.1. Please call pwalign::pairwiseAlignment() to get rid of this error. Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘pwalign’ Flavor: r-oldrel-macos-x86_64

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