CRAN Package Check Results for Maintainer ‘Kasper Kristensen <kaskr at dtu.dk>’

Last updated on 2026-02-15 13:53:04 CET.

Package	ERROR	NOTE	OK
readHAC		2	12
RTMB	1	3	10
TMB		3	11
tmbstan	1	5	8

Package readHAC

Current CRAN status: NOTE: 2, OK: 12

Version: 1.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Kasper", family = "Kristensen", role = c("aut", "cre"), email = "kaskr@dtu.dk") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package RTMB

Current CRAN status: ERROR: 1, NOTE: 3, OK: 10

Version: 1.8
Check: tests
Result: ERROR Running ‘tinytest.R’ [0s/1s] Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package("RTMB", ncpu=getOption("Ncpus", 1)) + } starting worker pid=56958 on localhost:11773 at 15:02:07.770 test-advector.R............... 9 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m23ms<1b>[0m test-bessel.R................. 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m test-distributions.R.......... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.5s<1b>[0m *** caught segfault *** address 0x1, cause 'invalid permissions' Traceback: 1: eigen(x, symmetric = TRUE) 2: eigen(x, symmetric = TRUE) 3: matlog(x + (1 - diag(5)) * AD(0+1i) + diag(5) * 2) 4: f(x) 5: mode(current) 6: attr.all.equal(target, current, tolerance = tolerance, scale = scale, ...) 7: all.equal.numeric(target, current, tolerance = tolerance, ...) 8: all.equal(target, current, tolerance = tolerance, ...) 9: fun(...) 10: expect_equal(f(x), F(x), info = "symmetric complex eigen") 11: eval(expr, envir = e) 12: eval(expr, envir = e) 13: FUN(X[[i]], ...) 14: (function (X, FUN, ...) { FUN <- match.fun(FUN) if (!is.vector(X) || is.object(X)) X <- as.list(X) .Internal(lapply(X, FUN))})(base::quote(c("/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-advector.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-bessel.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-distributions.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-factorize.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-model-spatial.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-model-spde.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-sparse.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-spline.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-tape.R")), FUN = base::quote(function (file, at_home = TRUE, verbose = getOption("tt.verbose", 2), color = getOption("tt.pr.color", TRUE), remove_side_effects = TRUE, side_effects = FALSE, set_env = list(), encoding = "unknown", ...) { if (!file_test("-f", file)) { stop(sprintf("'%s' does not exist or is a directory", file), call. = FALSE) } t0 <- Sys.time() if (length(set_env) > 0) { old_env_var <- sapply(names(set_env), Sys.getenv, unset = NA_character_, USE.NAMES = TRUE) do.call(Sys.setenv, set_env) } oldwd <- getwd() set_call_wd(oldwd) grDevices::pdf(file = nullfile()) envvar <- new.env() oldop <- new.env() locale <- Sys.getlocale() on.exit({ setwd(oldwd) set_call_wd("") Sys.unsetenv("TT_AT_HOME") if (remove_side_effects) { unset_envvar(envvar) reset_options(oldop) reset_locale(locale) } grDevices::dev.off() if (exists("old_env_var")) { unset <- is.na(old_env_var) Sys.unsetenv(names(old_env_var)[unset]) if (any(!unset)) do.call(Sys.setenv, as.list(old_env_var)[!unset]) } }) setwd(dirname(file)) file <- basename(file) if (at_home) Sys.setenv(TT_AT_HOME = TRUE) o <- output() e <- new.env(parent = globalenv()) add_locally_masked_functions(envir = e, output = o) e$Sys.setenv <- capture_envvar(Sys.setenv, envvar) e$options <- capture_options(options, oldop) options(useFancyQuotes = FALSE) Sys.setenv(R_TESTS = "") sidefx <- new.env() e$report_side_effects <- capture_se(report_side_effects, sidefx) do.call(e$report_side_effects, as.list(side_effects)) local_report_envvar <- capture(report_envvar, o) local_report_cwd <- capture(report_cwd, o) local_report_files <- capture(report_files, o) local_report_locale <- capture(report_locale, o) check_double_colon(filename = file) parsed <- parse(file = file, keep.source = TRUE, encoding = encoding) src <- attr(parsed, "srcref") o$file <- file prfile <- basename(file) if (nchar(prfile) > 30) { prfile <- paste0("..", substr(prfile, nchar(prfile) - 27, nchar(prfile))) } prfile <- gsub(" ", ".", sprintf("%-30s", basename(file))) for (i in seq_along(parsed)) { expr <- parsed[[i]] o$fst <- src[[i]][1] o$lst <- src[[i]][3] o$call <- expr if (!o$exit) eval(expr, envir = e) else break local_report_envvar(sidefx) local_report_cwd(sidefx) local_report_files(sidefx) local_report_locale(sidefx) if (verbose == 2) print_status(prfile, o, color, print = TRUE) } td <- abs(Sys.time() - t0) tx <- humanize(td, color = color) if (verbose == 1) { str <- print_status(prfile, o, color, print = FALSE) if (o$exit) catf("%s %s %s\n", str, tx, o$exit_msg()) else catf("%s %s\n", str, tx) } if (verbose >= 2) { str <- if (o$exit) catf("%s %s\n", tx, o$exit_msg()) else catf("%s\n", tx) } test_output <- o$gimme() structure(test_output, class = "tinytests", duration = td)}), at_home = base::quote(FALSE), verbose = base::quote(1), color = base::quote(TRUE), remove_side_effects = base::quote(TRUE)) 15: do.call(msg$data$fun, msg$data$args, quote = TRUE) 16: doTryCatch(return(expr), name, parentenv, handler) 17: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 18: tryCatchList(expr, classes, parentenv, handlers) 19: tryCatch(do.call(msg$data$fun, msg$data$args, quote = TRUE), error = handler) 20: doTryCatch(return(expr), name, parentenv, handler) 21: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 22: tryCatchList(expr, classes, parentenv, handlers) 23: tryCatch({ msg <- recvData(master) if (msg$type == "DONE") { closeNode(master) FALSE } else if (msg$type == "EXEC") { success <- TRUE handler <- function(e) { success <<- FALSE structure(conditionMessage(e), class = c("snow-try-error", "try-error")) } t1 <- proc.time() value <- tryCatch(do.call(msg$data$fun, msg$data$args, quote = TRUE), error = handler) t2 <- proc.time() value <- list(type = "VALUE", value = value, success = success, time = t2 - t1, tag = msg$data$tag) msg <- NULL sendData(master, value) value <- NULL TRUE } else { TRUE }}, interrupt = function(e) TRUE) 24: workCommand(master) 25: workLoop(makeSOCKmaster(master, port, setup_timeout, timeout, useXDR, setup_strategy)) 26: tryCatch(parallel:::.workRSOCK, error = function(e) parallel:::.slaveRSOCK)() An irrecoverable exception occurred. R is aborting now ... Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... FUN -> recvData -> recvData.SOCKnode -> unserialize Execution halted Flavor: r-devel-macos-arm64

Version: 1.8
Check: installed package size
Result: NOTE installed size is 128.2Mb sub-directories of 1Mb or more: R 2.0Mb libs 125.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TMB

Current CRAN status: NOTE: 3, OK: 11

Version: 1.9.19
Check: installed package size
Result: NOTE installed size is 16.6Mb sub-directories of 1Mb or more: examples 12.4Mb include 3.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package tmbstan

Current CRAN status: ERROR: 1, NOTE: 5, OK: 8

Version: 1.0.91
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Kasper Kristensen <kaskr@dtu.dk>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Kasper", family = "Kristensen", role = c("aut", "cre"), email = "kaskr@dtu.dk") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.91
Check: examples
Result: ERROR Running examples in ‘tmbstan-Ex.R’ failed The error most likely occurred in: > ### Name: tmbstan > ### Title: Draw MCMC samples from a TMB model object using Stan > ### Aliases: tmbstan > > ### ** Examples > > TMB::runExample("simple") Running example simple > require(TMB) Loading required package: TMB > dyn.load(dynlib("simple")) Error in dyn.load(dynlib("simple")) : unable to load shared object '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so': dlopen(/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so, 0x0006): tried: '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so' (not a mach-o file), '/System/Volumes/Preboot/Cryptexes/OS/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so' (no such file), '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/TMB/examples/simple.so' (not a mach-o file) Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> dyn.load Execution halted Flavor: r-release-macos-x86_64

Version: 1.0.91
Check: installed package size
Result: NOTE installed size is 46.8Mb sub-directories of 1Mb or more: libs 46.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.91
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64