Last updated on 2026-03-16 09:51:30 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8 | 574.53 | 113.81 | 688.34 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.8 | 508.26 | 80.61 | 588.87 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.8 | 660.00 | 184.72 | 844.72 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.8 | 1380.00 | 168.26 | 1548.26 | ERROR | |
| r-devel-macos-arm64 | 1.8 | 127.00 | -54.00 | 73.00 | ERROR | |
| r-devel-windows-x86_64 | 1.8 | 631.00 | 262.00 | 893.00 | ERROR | |
| r-patched-linux-x86_64 | 1.8 | 656.97 | 110.93 | 767.90 | OK | |
| r-release-linux-x86_64 | 1.8 | 669.09 | 109.20 | 778.29 | OK | |
| r-release-macos-arm64 | 1.8 | OK | ||||
| r-release-macos-x86_64 | 1.8 | 367.00 | -20.00 | 347.00 | OK | |
| r-release-windows-x86_64 | 1.8 | 622.00 | 261.00 | 883.00 | OK | |
| r-oldrel-macos-arm64 | 1.8 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.8 | 353.00 | 0.00 | 353.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.8 | 774.00 | 311.00 | 1085.00 | NOTE |
Version: 1.8
Check: examples
Result: ERROR
Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ### is.array.osa is.matrix.osa
>
> ### ** Examples
>
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+ obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+ ans <- 0
+ jump <- c(p$rw[1], diff(p$rw))
+ ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+ ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+ ans
+ }
> obj <- MakeADFun(func,
+ parameters=list(rw=rep(0,20), sd=1),
+ random="rw")
Error in advector(e2) :
Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown
Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
▆
1. └─RTMB::MakeTape(diff, numeric(5))
2. └─RTMB:::.MakeTape(f, x)
3. ├─base (local) f(x)
4. └─RTMB::diff.advector(x)
5. └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
6. └─RTMB::Ops.advector(...)
7. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
8. └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’
--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’
SUMMARY: processing the following file failed:
‘RTMB-advanced.rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.8
Check: examples
Result: ERROR
Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:
> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ### is.array.osa is.matrix.osa
>
> ### ** Examples
>
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+ obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+ ans <- 0
+ jump <- c(p$rw[1], diff(p$rw))
+ ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+ ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+ ans
+ }
> obj <- MakeADFun(func,
+ parameters=list(rw=rep(0,20), sd=1),
+ random="rw")
Error in advector(e2) :
Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown
Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
▆
1. └─RTMB::MakeTape(diff, numeric(5))
2. └─RTMB:::.MakeTape(f, x)
3. ├─base (local) f(x)
4. └─RTMB::diff.advector(x)
5. └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
6. └─RTMB::Ops.advector(...)
7. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
8. └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’
--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’
SUMMARY: processing the following file failed:
‘RTMB-advanced.rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.8
Check: tests
Result: ERROR
Running ‘tinytest.R’ [0s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly=TRUE)) {
+ tinytest::test_package("RTMB", ncpu=getOption("Ncpus", 1))
+ }
starting worker pid=56958 on localhost:11773 at 15:02:07.770
test-advector.R............... 9 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m23ms<1b>[0m
test-bessel.R................. 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m
test-distributions.R.......... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.5s<1b>[0m
*** caught segfault ***
address 0x1, cause 'invalid permissions'
Traceback:
1: eigen(x, symmetric = TRUE)
2: eigen(x, symmetric = TRUE)
3: matlog(x + (1 - diag(5)) * AD(0+1i) + diag(5) * 2)
4: f(x)
5: mode(current)
6: attr.all.equal(target, current, tolerance = tolerance, scale = scale, ...)
7: all.equal.numeric(target, current, tolerance = tolerance, ...)
8: all.equal(target, current, tolerance = tolerance, ...)
9: fun(...)
10: expect_equal(f(x), F(x), info = "symmetric complex eigen")
11: eval(expr, envir = e)
12: eval(expr, envir = e)
13: FUN(X[[i]], ...)
14: (function (X, FUN, ...) { FUN <- match.fun(FUN) if (!is.vector(X) || is.object(X)) X <- as.list(X) .Internal(lapply(X, FUN))})(base::quote(c("/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-advector.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-bessel.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-distributions.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-factorize.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-model-spatial.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-model-spde.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-sparse.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-spline.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-tape.R")), FUN = base::quote(function (file, at_home = TRUE, verbose = getOption("tt.verbose", 2), color = getOption("tt.pr.color", TRUE), remove_side_effects = TRUE, side_effects = FALSE, set_env = list(), encoding = "unknown", ...) { if (!file_test("-f", file)) { stop(sprintf("'%s' does not exist or is a directory", file), call. = FALSE) } t0 <- Sys.time() if (length(set_env) > 0) { old_env_var <- sapply(names(set_env), Sys.getenv, unset = NA_character_, USE.NAMES = TRUE) do.call(Sys.setenv, set_env) } oldwd <- getwd() set_call_wd(oldwd) grDevices::pdf(file = nullfile()) envvar <- new.env() oldop <- new.env() locale <- Sys.getlocale() on.exit({ setwd(oldwd) set_call_wd("") Sys.unsetenv("TT_AT_HOME") if (remove_side_effects) { unset_envvar(envvar) reset_options(oldop) reset_locale(locale) } grDevices::dev.off() if (exists("old_env_var")) { unset <- is.na(old_env_var) Sys.unsetenv(names(old_env_var)[unset]) if (any(!unset)) do.call(Sys.setenv, as.list(old_env_var)[!unset]) } }) setwd(dirname(file)) file <- basename(file) if (at_home) Sys.setenv(TT_AT_HOME = TRUE) o <- output() e <- new.env(parent = globalenv()) add_locally_masked_functions(envir = e, output = o) e$Sys.setenv <- capture_envvar(Sys.setenv, envvar) e$options <- capture_options(options, oldop) options(useFancyQuotes = FALSE) Sys.setenv(R_TESTS = "") sidefx <- new.env() e$report_side_effects <- capture_se(report_side_effects, sidefx) do.call(e$report_side_effects, as.list(side_effects)) local_report_envvar <- capture(report_envvar, o) local_report_cwd <- capture(report_cwd, o) local_report_files <- capture(report_files, o) local_report_locale <- capture(report_locale, o) check_double_colon(filename = file) parsed <- parse(file = file, keep.source = TRUE, encoding = encoding) src <- attr(parsed, "srcref") o$file <- file prfile <- basename(file) if (nchar(prfile) > 30) { prfile <- paste0("..", substr(prfile, nchar(prfile) - 27, nchar(prfile))) } prfile <- gsub(" ", ".", sprintf("%-30s", basename(file))) for (i in seq_along(parsed)) { expr <- parsed[[i]] o$fst <- src[[i]][1] o$lst <- src[[i]][3] o$call <- expr if (!o$exit) eval(expr, envir = e) else break local_report_envvar(sidefx) local_report_cwd(sidefx) local_report_files(sidefx) local_report_locale(sidefx) if (verbose == 2) print_status(prfile, o, color, print = TRUE) } td <- abs(Sys.time() - t0) tx <- humanize(td, color = color) if (verbose == 1) { str <- print_status(prfile, o, color, print = FALSE) if (o$exit) catf("%s %s %s\n", str, tx, o$exit_msg()) else catf("%s %s\n", str, tx) } if (verbose >= 2) { str <- if (o$exit) catf("%s %s\n", tx, o$exit_msg()) else catf("%s\n", tx) } test_output <- o$gimme() structure(test_output, class = "tinytests", duration = td)}), at_home = base::quote(FALSE), verbose = base::quote(1), color = base::quote(TRUE), remove_side_effects = base::quote(TRUE))
15: do.call(msg$data$fun, msg$data$args, quote = TRUE)
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch(do.call(msg$data$fun, msg$data$args, quote = TRUE), error = handler)
20: doTryCatch(return(expr), name, parentenv, handler)
21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
22: tryCatchList(expr, classes, parentenv, handlers)
23: tryCatch({ msg <- recvData(master) if (msg$type == "DONE") { closeNode(master) FALSE } else if (msg$type == "EXEC") { success <- TRUE handler <- function(e) { success <<- FALSE structure(conditionMessage(e), class = c("snow-try-error", "try-error")) } t1 <- proc.time() value <- tryCatch(do.call(msg$data$fun, msg$data$args, quote = TRUE), error = handler) t2 <- proc.time() value <- list(type = "VALUE", value = value, success = success, time = t2 - t1, tag = msg$data$tag) msg <- NULL sendData(master, value) value <- NULL TRUE } else { TRUE }}, interrupt = function(e) TRUE)
24: workCommand(master)
25: workLoop(makeSOCKmaster(master, port, setup_timeout, timeout, useXDR, setup_strategy))
26: tryCatch(parallel:::.workRSOCK, error = function(e) parallel:::.slaveRSOCK)()
An irrecoverable exception occurred. R is aborting now ...
Error in unserialize(node$con) : error reading from connection
Calls: <Anonymous> ... FUN -> recvData -> recvData.SOCKnode -> unserialize
Execution halted
Flavor: r-devel-macos-arm64
Version: 1.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'RTMB-advanced.rmd' using rmarkdown
Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
▆
1. └─RTMB::MakeTape(diff, numeric(5))
2. └─RTMB:::.MakeTape(f, x)
3. ├─base (local) f(x)
4. └─RTMB::diff.advector(x)
5. └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
6. └─RTMB::Ops.advector(...)
7. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
8. └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building 'RTMB-advanced.rmd'
--- re-building 'RTMB-introduction.rmd' using rmarkdown
--- finished re-building 'RTMB-introduction.rmd'
SUMMARY: processing the following file failed:
'RTMB-advanced.rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.8
Check: installed package size
Result: NOTE
installed size is 128.2Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 125.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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