CRAN Package Check Results for Maintainer ‘Jenna Reps <jreps at its.jnj.com>’

Last updated on 2025-10-10 21:50:13 CEST.

Package	ERROR	OK
Characterization	2	11
OhdsiReportGenerator	4	9
OhdsiShinyAppBuilder		13

Package Characterization

Current CRAN status: ERROR: 2, OK: 11

Version: 2.2.0
Check: examples
Result: ERROR Running examples in ‘Characterization-Ex.R’ failed The error most likely occurred in: > ### Name: insertResultsToDatabase > ### Title: Upload the results into a result database > ### Aliases: insertResultsToDatabase > > ### ** Examples > > > # generate results into resultsFolder > conDet <- exampleOmopConnectionDetails() > > tteSet <- createTimeToEventSettings( + targetIds = c(1,2), + outcomeIds = 3 + ) > > cSet <- createCharacterizationSettings( + timeToEventSettings = tteSet + ) > > runCharacterizationAnalyses( + connectionDetails = conDet, + targetDatabaseSchema = 'main', + targetTable = 'cohort', + outcomeDatabaseSchema = 'main', + outcomeTable = 'cohort', + cdmDatabaseSchema = 'main', + characterizationSettings = cSet, + outputDirectory = file.path(tempdir(),'database') + ) Creating directory /Volumes/Temp/tmp/RtmpNgByu6/database Creating directory /Volumes/Temp/tmp/RtmpNgByu6/database/execution Creating new cluster Connecting using SQLite driver Uploading #cohort_settings Inserting data took 0.0214 secs Computing time to event results Executing SQL took 0.0146 secs Computing time-to-event for 2 T-O pairs took 0.202 secs exporting to csv file Writing 96 rows to csv Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Execution halted Flavor: r-oldrel-macos-arm64

Version: 2.2.0
Check: examples
Result: ERROR Running examples in ‘Characterization-Ex.R’ failed The error most likely occurred in: > ### Name: insertResultsToDatabase > ### Title: Upload the results into a result database > ### Aliases: insertResultsToDatabase > > ### ** Examples > > > # generate results into resultsFolder > conDet <- exampleOmopConnectionDetails() > > tteSet <- createTimeToEventSettings( + targetIds = c(1,2), + outcomeIds = 3 + ) > > cSet <- createCharacterizationSettings( + timeToEventSettings = tteSet + ) > > runCharacterizationAnalyses( + connectionDetails = conDet, + targetDatabaseSchema = 'main', + targetTable = 'cohort', + outcomeDatabaseSchema = 'main', + outcomeTable = 'cohort', + cdmDatabaseSchema = 'main', + characterizationSettings = cSet, + outputDirectory = file.path(tempdir(),'database') + ) Creating directory /Volumes/Temp/tmp/RtmpznKM3a/database Creating directory /Volumes/Temp/tmp/RtmpznKM3a/database/execution Creating new cluster Connecting using SQLite driver Uploading #cohort_settings Inserting data took 0.0808 secs Computing time to event results Executing SQL took 0.0595 secs Computing time-to-event for 2 T-O pairs took 0.705 secs exporting to csv file Writing 96 rows to csv Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Execution halted Flavor: r-oldrel-macos-x86_64

Package OhdsiReportGenerator

Current CRAN status: ERROR: 4, OK: 9

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Backwards.R:9:5'): generatePresentationMultiple old works ────── Error in `testthat::skip_on_cran("Quarto not found so skipping old generate presentation multiple")`: unused argument ("Quarto not found so skipping old generate presentation multiple") ── Error ('test-Generate.R:8:5'): generatePresentation ───────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate presentation")`: unused argument ("Quarto not found so skipping generate presentation") ── Error ('test-Generate.R:64:5'): generateFullReport ────────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate full report")`: unused argument ("Quarto not found so skipping generate full report") [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] Error: Test failures Execution halted Closing database connection Flavor: r-release-macos-arm64

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Backwards.R:9:5'): generatePresentationMultiple old works ────── Error in `testthat::skip_on_cran("Quarto not found so skipping old generate presentation multiple")`: unused argument ("Quarto not found so skipping old generate presentation multiple") ── Error ('test-Generate.R:8:5'): generatePresentation ───────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate presentation")`: unused argument ("Quarto not found so skipping generate presentation") ── Error ('test-Generate.R:64:5'): generateFullReport ────────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate full report")`: unused argument ("Quarto not found so skipping generate full report") [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] Error: Test failures Execution halted Closing database connection Flavor: r-release-macos-x86_64

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Backwards.R:9:5'): generatePresentationMultiple old works ────── Error in `testthat::skip_on_cran("Quarto not found so skipping old generate presentation multiple")`: unused argument ("Quarto not found so skipping old generate presentation multiple") ── Error ('test-Generate.R:8:5'): generatePresentation ───────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate presentation")`: unused argument ("Quarto not found so skipping generate presentation") ── Error ('test-Generate.R:64:5'): generateFullReport ────────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate full report")`: unused argument ("Quarto not found so skipping generate full report") [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] Error: Test failures Execution halted Closing database connection Flavor: r-oldrel-macos-arm64

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Backwards.R:9:5'): generatePresentationMultiple old works ────── Error in `testthat::skip_on_cran("Quarto not found so skipping old generate presentation multiple")`: unused argument ("Quarto not found so skipping old generate presentation multiple") ── Error ('test-Generate.R:8:5'): generatePresentation ───────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate presentation")`: unused argument ("Quarto not found so skipping generate presentation") ── Error ('test-Generate.R:64:5'): generateFullReport ────────────────────────── Error in `testthat::skip_on_cran("Quarto not found so skipping generate full report")`: unused argument ("Quarto not found so skipping generate full report") [ FAIL 3 | WARN 2 | SKIP 2 | PASS 417 ] Error: Test failures Execution halted Closing database connection Flavor: r-oldrel-macos-x86_64

Package OhdsiShinyAppBuilder

Current CRAN status: OK: 13