CRAN Package Check Results for Package OhdsiReportGenerator

Last updated on 2025-03-09 22:53:05 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.1	5.78	97.77	103.55	OK
r-devel-linux-x86_64-debian-gcc	1.0.1	3.38	69.56	72.94	OK
r-devel-linux-x86_64-fedora-clang	1.0.1			170.90	OK
r-devel-linux-x86_64-fedora-gcc	1.0.1			184.50	OK
r-devel-macos-arm64	1.0.1			32.00	ERROR
r-devel-macos-x86_64	1.0.1			61.00	ERROR
r-devel-windows-x86_64	1.0.1	10.00	154.00	164.00	OK
r-patched-linux-x86_64	1.0.1	6.36	90.20	96.56	OK
r-release-linux-x86_64	1.0.1	4.95	89.92	94.87	OK
r-release-macos-arm64	1.0.1			43.00	ERROR
r-release-macos-x86_64	1.0.1			67.00	ERROR
r-release-windows-x86_64	1.0.1	9.00	116.00	125.00	OK
r-oldrel-macos-arm64	1.0.1			48.00	ERROR
r-oldrel-macos-x86_64	1.0.1			68.00	ERROR
r-oldrel-windows-x86_64	1.0.1	10.00	149.00	159.00	OK

Check Details

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [4s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Generate.R:10:3'): generatePresentationMultiple ──────────────── Error in `find_quarto()`: Quarto command-line tools path not found! Please make sure you have installed and added Quarto to your PATH or set the QUARTO_PATH environment variable. Backtrace: ▆ 1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3 2. └─quarto::quarto_render(...) 3. └─quarto:::find_quarto() 4. └─cli::cli_abort(quarto_not_found_msg) 5. └─rlang::abort(...) [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] Error: Test failures Execution halted Closing database connection Flavor: r-devel-macos-arm64

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [8s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Generate.R:10:3'): generatePresentationMultiple ──────────────── Error in `find_quarto()`: Quarto command-line tools path not found! Please make sure you have installed and added Quarto to your PATH or set the QUARTO_PATH environment variable. Backtrace: ▆ 1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3 2. └─quarto::quarto_render(...) 3. └─quarto:::find_quarto() 4. └─cli::cli_abort(quarto_not_found_msg) 5. └─rlang::abort(...) [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] Error: Test failures Execution halted Closing database connection Flavors: r-devel-macos-x86_64, r-release-macos-x86_64

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Generate.R:10:3'): generatePresentationMultiple ──────────────── Error in `find_quarto()`: Quarto command-line tools path not found! Please make sure you have installed and added Quarto to your PATH or set the QUARTO_PATH environment variable. Backtrace: ▆ 1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3 2. └─quarto::quarto_render(...) 3. └─quarto:::find_quarto() 4. └─cli::cli_abort(quarto_not_found_msg) 5. └─rlang::abort(...) [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] Error: Test failures Execution halted Closing database connection Flavor: r-release-macos-arm64

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘OhdsiReportGenerator-Ex.R’ failed The error most likely occurred in: > ### Name: kableDark > ### Title: output a nicely formatted html table > ### Aliases: kableDark > > ### ** Examples > > kableDark( + data = data.frame(a=1,b=4), + caption = 'A made up table to demonstrate this function', + position = 'h' + ) Closing database connection Closing database connection Closing database connection Closing database connection Closing database connection Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called ‘systemfonts’ Calls: kableDark ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Closing database connection Closing database connection Closing database connection Closing database connection Flavor: r-oldrel-macos-arm64

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [6s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 2 | WARN 1 | SKIP 2 | PASS 384 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Generate.R:10:3'): generatePresentationMultiple ──────────────── Error in `find_quarto()`: Quarto command-line tools path not found! Please make sure you have installed and added Quarto to your PATH or set the QUARTO_PATH environment variable. Backtrace: ▆ 1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3 2. └─quarto::quarto_render(...) 3. └─quarto:::find_quarto() 4. └─cli::cli_abort(quarto_not_found_msg) 5. └─rlang::abort(...) ── Error ('test-Helpers.R:105:1'): kableDark ─────────────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts' Backtrace: ▆ 1. ├─OhdsiReportGenerator::kableDark(...) at test-Helpers.R:105:1 2. │ └─... %>% ... 3. └─base::loadNamespace(x) 4. ├─base::namespaceImportFrom(...) 5. │ └─base::asNamespace(ns) 6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 7. ├─base::namespaceImportFrom(...) 8. │ └─base::asNamespace(ns) 9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 10. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 11. └─base (local) withOneRestart(expr, restarts[[1L]]) 12. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 2 | WARN 1 | SKIP 2 | PASS 384 ] Error: Test failures Execution halted Closing database connection Flavor: r-oldrel-macos-arm64

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("OhdsiReportGenerator") Loading required package: OhdsiReportGenerator Connecting using SQLite driver [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-Helpers.R:89:1' • skip prediction report due to odd linux error (1): 'test-PredictionReport.R:5:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-Generate.R:10:3'): generatePresentationMultiple ──────────────── Error in `find_quarto()`: Quarto command-line tools path not found! Please make sure you have installed and added Quarto to your PATH or set the QUARTO_PATH environment variable. Backtrace: ▆ 1. └─OhdsiReportGenerator::generatePresentationMultiple(...) at test-Generate.R:10:3 2. └─quarto::quarto_render(...) 3. └─quarto:::find_quarto() 4. └─cli::cli_abort(quarto_not_found_msg) 5. └─rlang::abort(...) [ FAIL 1 | WARN 1 | SKIP 2 | PASS 385 ] Error: Test failures Execution halted Closing database connection Flavor: r-oldrel-macos-x86_64