Last updated on 2025-01-22 13:00:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.1 | 2.36 | 24.38 | 26.74 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.1 | 1.79 | 19.76 | 21.55 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.1 | 44.81 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.1 | 42.09 | OK | |||
| r-devel-windows-x86_64 | 0.4.1 | 3.00 | 249.00 | 252.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.1 | 2.48 | 23.64 | 26.12 | OK | |
| r-release-linux-x86_64 | 0.4.1 | 2.21 | 23.73 | 25.94 | OK | |
| r-release-macos-arm64 | 0.4.1 | 22.00 | OK | |||
| r-release-macos-x86_64 | 0.4.1 | 31.00 | OK | |||
| r-release-windows-x86_64 | 0.4.1 | 4.00 | 122.00 | 126.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.4.1 | 23.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.4.1 | 31.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.4.1 | 3.00 | 96.00 | 99.00 | ERROR |
Version: 0.4.1
Check: tests
Result: ERROR
Running 'testthat.R' [194s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(jlme)
>
> test_check("jlme")
Starting Julia ...
Connecting to Julia TCP server at localhost:11980 ...
[1] 11980
Julia version 1.8.5 detected.
No active Julia connection. Please call `jlme_setup()`.
[1] FALSE
julia
"C:\\PROGRA~1\\Julia\\bin\\julia.exe"
Starting Julia (v1.8.5) ...
Activating new project at `D:\temp\2025_01_19_01_50_00_29288\jl_fB4Y7N`
Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
Resolving package versions...
Installed Distributions ──── v0.25.117
Installed MathOptInterface ─ v1.35.1
Updating `D:\temp\2025_01_19_01_50_00_29288\jl_fB4Y7N\Project.toml`
[38e38edf] + GLM v1.9.0
[ff71e718] + MixedModels v4.28.0
[3eaba693] + StatsModels v0.7.4
Updating `D:\temp\2025_01_19_01_50_00_29288\jl_fB4Y7N\Manifest.toml`
[79e6a3ab] + Adapt v4.1.1
[66dad0bd] + AliasTables v1.1.3
⌅ [4c555306] + ArrayLayouts v1.10.4
⌅ [69666777] + Arrow v2.7.4
[31f734f8] + ArrowTypes v2.3.0
[093aae92] + BSplineKit v0.17.7
⌅ [aae01518] + BandedMatrices v1.7.6
[6e4b80f9] + BenchmarkTools v1.6.0
[c3b6d118] + BitIntegers v0.3.2
[fa961155] + CEnum v0.5.0
[d360d2e6] + ChainRulesCore v1.25.1
[9e997f8a] + ChangesOfVariables v0.1.9
[523fee87] + CodecBzip2 v0.8.5
[5ba52731] + CodecLz4 v0.4.5
[944b1d66] + CodecZlib v0.7.6
[6b39b394] + CodecZstd v0.8.6
[bbf7d656] + CommonSubexpressions v0.3.1
[34da2185] + Compat v4.16.0
[f0e56b4a] + ConcurrentUtilities v2.4.3
[9a962f9c] + DataAPI v1.16.0
[864edb3b] + DataStructures v0.18.20
[e2d170a0] + DataValueInterfaces v1.0.0
[b429d917] + DensityInterface v0.4.0
[85a47980] + Dictionaries v0.4.3
[163ba53b] + DiffResults v1.1.0
[b552c78f] + DiffRules v1.15.1
[31c24e10] + Distributions v0.25.117
[ffbed154] + DocStringExtensions v0.9.3
[4e289a0a] + EnumX v1.0.4
[e2ba6199] + ExprTools v0.1.10
[442a2c76] + FastGaussQuadrature v1.0.2
[1a297f60] + FillArrays v1.13.0
[f6369f11] + ForwardDiff v0.10.38
[38e38edf] + GLM v1.9.0
[34004b35] + HypergeometricFunctions v0.3.25
[615f187c] + IfElse v0.1.1
[313cdc1a] + Indexing v1.1.1
[842dd82b] + InlineStrings v1.4.2
[3587e190] + InverseFunctions v0.1.17
[92d709cd] + IrrationalConstants v0.2.2
[82899510] + IteratorInterfaceExtensions v1.0.0
[692b3bcd] + JLLWrappers v1.7.0
[682c06a0] + JSON v0.21.4
[0f8b85d8] + JSON3 v1.14.1
⌅ [2ab3a3ac] + LogExpFunctions v0.3.28
[1914dd2f] + MacroTools v0.5.15
[b8f27783] + MathOptInterface v1.35.1
[e1d29d7a] + Missings v1.2.0
[ff71e718] + MixedModels v4.28.0
[7e9fb7ac] + MixedModelsDatasets v0.1.1
[78c3b35d] + Mocking v0.8.1
[d8a4904e] + MutableArithmetics v1.6.2
[76087f3c] + NLopt v1.1.2
[77ba4419] + NaNMath v1.0.3
[bac558e1] + OrderedCollections v1.7.0
⌅ [90014a1f] + PDMats v0.11.31
[69de0a69] + Parsers v2.8.1
[2dfb63ee] + PooledArrays v1.4.3
[aea7be01] + PrecompileTools v1.2.1
[21216c6a] + Preferences v1.4.3
[92933f4c] + ProgressMeter v1.10.2
[43287f4e] + PtrArrays v1.3.0
[1fd47b50] + QuadGK v2.11.1
[3cdcf5f2] + RecipesBase v1.3.4
[189a3867] + Reexport v1.2.2
[ae029012] + Requires v1.3.0
[79098fc4] + Rmath v0.8.0
[6c6a2e73] + Scratch v1.2.1
[91c51154] + SentinelArrays v1.4.8
[1277b4bf] + ShiftedArrays v2.0.0
[a2af1166] + SortingAlgorithms v1.2.1
[276daf66] + SpecialFunctions v2.5.0
[03a91e81] + SplitApplyCombine v1.2.3
⌅ [aedffcd0] + Static v0.8.9
[90137ffa] + StaticArrays v1.9.10
[1e83bf80] + StaticArraysCore v1.4.3
[82ae8749] + StatsAPI v1.7.0
[2913bbd2] + StatsBase v0.34.4
[4c63d2b9] + StatsFuns v1.3.2
[3eaba693] + StatsModels v0.7.4
[856f2bd8] + StructTypes v1.11.0
[dc5dba14] + TZJData v1.3.1+2024b
[3783bdb8] + TableTraits v1.0.1
[bd369af6] + Tables v1.12.0
[f269a46b] + TimeZones v1.20.0
[3bb67fe8] + TranscodingStreams v0.11.3
[9d95f2ec] + TypedTables v1.4.6
[6e34b625] + Bzip2_jll v1.0.8+4
[5ced341a] + Lz4_jll v1.10.1+0
[079eb43e] + NLopt_jll v2.9.0+0
[efe28fd5] + OpenSpecFun_jll v0.5.6+0
[f50d1b31] + Rmath_jll v0.5.1+0
[3161d3a3] + Zstd_jll v1.5.7+0
[0dad84c5] + ArgTools v1.1.1
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[f43a241f] + Downloads v1.6.0
[7b1f6079] + FileWatching
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[4af54fe1] + LazyArtifacts
[b27032c2] + LibCURL v0.6.3
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[ca575930] + NetworkOptions v1.2.0
[44cfe95a] + Pkg v1.8.0
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA v0.7.0
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML v1.0.0
[a4e569a6] + Tar v1.10.1
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[e66e0078] + CompilerSupportLibraries_jll v1.0.1+0
[deac9b47] + LibCURL_jll v7.84.0+0
[29816b5a] + LibSSH2_jll v1.10.2+0
[c8ffd9c3] + MbedTLS_jll v2.28.0+0
[14a3606d] + MozillaCACerts_jll v2022.2.1
[4536629a] + OpenBLAS_jll v0.3.20+0
[05823500] + OpenLibm_jll v0.8.1+0
[83775a58] + Zlib_jll v1.2.12+3
[8e850b90] + libblastrampoline_jll v5.1.1+0
[8e850ede] + nghttp2_jll v1.48.0+0
[3f19e933] + p7zip_jll v17.4.0+0
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Precompiling project...
✗ GLM
✓ MathOptInterface
✓ NLopt
✗ MixedModels
2 dependencies successfully precompiled in 137 seconds. 95 already precompiled.
3 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
ERROR: LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] include
@ .\Base.jl:419 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1554
[8] top-level scope
@ stdin:1
in expression starting at C:\Users\CRAN\.julia\packages\GLM\vM20T\src\GLM.jl:1
in expression starting at stdin:1
Timing stopped at: 0.02 0.01 178.3
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ────────────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to C:\Users\CRAN\.julia\compiled\v1.8\GLM\jl_35F1.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1707
[3] compilecache
@ .\loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] eval
@ .\boot.jl:368 [inlined]
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[11] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[12] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:150
[13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[14] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:67
[16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\evaluating.jl:55
[17] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.5\JuliaConnectoR\Julia\communicating.jl:185
[18] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:3
Backtrace:
▆
1. ├─base::print(...) at test-model.R:10:1
2. ├─base::system.time(...)
3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3
4. ├─base::do.call(.jlme_setup, params)
5. └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE)
6. └─jlme:::load_libs(add = add)
7. └─jlme::jl("\n using StatsModels;\n using GLM;\n using MixedModels;\n ")
8. └─JuliaConnectoR::juliaEval(expr)
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.4.1
Check: tests
Result: ERROR
Running 'testthat.R' [60s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(jlme)
>
> test_check("jlme")
Starting Julia ...
Connecting to Julia TCP server at localhost:11980 ...
[1] 11980
Julia version 1.8.5 detected.
No active Julia connection. Please call `jlme_setup()`.
[1] FALSE
julia
"C:\\PROGRA~1\\Julia\\bin\\julia.exe"
Starting Julia (v1.8.5) ...
Activating new project at `D:\temp\2025_01_21_01_50_00_3756\jl_uKW2v4`
Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
Resolving package versions...
Updating `D:\temp\2025_01_21_01_50_00_3756\jl_uKW2v4\Project.toml`
[38e38edf] + GLM v1.9.0
[ff71e718] + MixedModels v4.28.0
[3eaba693] + StatsModels v0.7.4
Updating `D:\temp\2025_01_21_01_50_00_3756\jl_uKW2v4\Manifest.toml`
[79e6a3ab] + Adapt v4.1.1
[66dad0bd] + AliasTables v1.1.3
⌅ [4c555306] + ArrayLayouts v1.10.4
⌅ [69666777] + Arrow v2.7.4
[31f734f8] + ArrowTypes v2.3.0
[093aae92] + BSplineKit v0.17.7
⌅ [aae01518] + BandedMatrices v1.7.6
[6e4b80f9] + BenchmarkTools v1.6.0
[c3b6d118] + BitIntegers v0.3.2
[fa961155] + CEnum v0.5.0
[d360d2e6] + ChainRulesCore v1.25.1
[9e997f8a] + ChangesOfVariables v0.1.9
[523fee87] + CodecBzip2 v0.8.5
[5ba52731] + CodecLz4 v0.4.5
[944b1d66] + CodecZlib v0.7.6
[6b39b394] + CodecZstd v0.8.6
[bbf7d656] + CommonSubexpressions v0.3.1
[34da2185] + Compat v4.16.0
[f0e56b4a] + ConcurrentUtilities v2.4.3
[9a962f9c] + DataAPI v1.16.0
[864edb3b] + DataStructures v0.18.20
[e2d170a0] + DataValueInterfaces v1.0.0
[b429d917] + DensityInterface v0.4.0
[85a47980] + Dictionaries v0.4.3
[163ba53b] + DiffResults v1.1.0
[b552c78f] + DiffRules v1.15.1
[31c24e10] + Distributions v0.25.117
[ffbed154] + DocStringExtensions v0.9.3
[4e289a0a] + EnumX v1.0.4
[e2ba6199] + ExprTools v0.1.10
[442a2c76] + FastGaussQuadrature v1.0.2
[1a297f60] + FillArrays v1.13.0
[f6369f11] + ForwardDiff v0.10.38
[38e38edf] + GLM v1.9.0
[34004b35] + HypergeometricFunctions v0.3.25
[615f187c] + IfElse v0.1.1
[313cdc1a] + Indexing v1.1.1
[842dd82b] + InlineStrings v1.4.2
[3587e190] + InverseFunctions v0.1.17
[92d709cd] + IrrationalConstants v0.2.2
[82899510] + IteratorInterfaceExtensions v1.0.0
[692b3bcd] + JLLWrappers v1.7.0
[682c06a0] + JSON v0.21.4
[0f8b85d8] + JSON3 v1.14.1
⌅ [2ab3a3ac] + LogExpFunctions v0.3.28
[1914dd2f] + MacroTools v0.5.15
[b8f27783] + MathOptInterface v1.35.1
[e1d29d7a] + Missings v1.2.0
[ff71e718] + MixedModels v4.28.0
[7e9fb7ac] + MixedModelsDatasets v0.1.1
[78c3b35d] + Mocking v0.8.1
[d8a4904e] + MutableArithmetics v1.6.2
[76087f3c] + NLopt v1.1.2
[77ba4419] + NaNMath v1.0.3
[bac558e1] + OrderedCollections v1.7.0
⌅ [90014a1f] + PDMats v0.11.31
[69de0a69] + Parsers v2.8.1
[2dfb63ee] + PooledArrays v1.4.3
[aea7be01] + PrecompileTools v1.2.1
[21216c6a] + Preferences v1.4.3
[92933f4c] + ProgressMeter v1.10.2
[43287f4e] + PtrArrays v1.3.0
[1fd47b50] + QuadGK v2.11.1
[3cdcf5f2] + RecipesBase v1.3.4
[189a3867] + Reexport v1.2.2
[ae029012] + Requires v1.3.0
[79098fc4] + Rmath v0.8.0
[6c6a2e73] + Scratch v1.2.1
[91c51154] + SentinelArrays v1.4.8
[1277b4bf] + ShiftedArrays v2.0.0
[a2af1166] + SortingAlgorithms v1.2.1
[276daf66] + SpecialFunctions v2.5.0
[03a91e81] + SplitApplyCombine v1.2.3
⌅ [aedffcd0] + Static v0.8.9
[90137ffa] + StaticArrays v1.9.10
[1e83bf80] + StaticArraysCore v1.4.3
[82ae8749] + StatsAPI v1.7.0
[2913bbd2] + StatsBase v0.34.4
[4c63d2b9] + StatsFuns v1.3.2
[3eaba693] + StatsModels v0.7.4
[856f2bd8] + StructTypes v1.11.0
[dc5dba14] + TZJData v1.3.1+2024b
[3783bdb8] + TableTraits v1.0.1
[bd369af6] + Tables v1.12.0
[f269a46b] + TimeZones v1.20.0
[3bb67fe8] + TranscodingStreams v0.11.3
[9d95f2ec] + TypedTables v1.4.6
[6e34b625] + Bzip2_jll v1.0.8+4
[5ced341a] + Lz4_jll v1.10.1+0
[079eb43e] + NLopt_jll v2.9.0+0
[efe28fd5] + OpenSpecFun_jll v0.5.6+0
[f50d1b31] + Rmath_jll v0.5.1+0
[3161d3a3] + Zstd_jll v1.5.7+0
[0dad84c5] + ArgTools v1.1.1
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[f43a241f] + Downloads v1.6.0
[7b1f6079] + FileWatching
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[4af54fe1] + LazyArtifacts
[b27032c2] + LibCURL v0.6.3
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[ca575930] + NetworkOptions v1.2.0
[44cfe95a] + Pkg v1.8.0
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA v0.7.0
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML v1.0.0
[a4e569a6] + Tar v1.10.1
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[e66e0078] + CompilerSupportLibraries_jll v1.0.1+0
[deac9b47] + LibCURL_jll v7.84.0+0
[29816b5a] + LibSSH2_jll v1.10.2+0
[c8ffd9c3] + MbedTLS_jll v2.28.0+0
[14a3606d] + MozillaCACerts_jll v2022.2.1
[4536629a] + OpenBLAS_jll v0.3.20+0
[05823500] + OpenLibm_jll v0.8.1+0
[83775a58] + Zlib_jll v1.2.12+3
[8e850b90] + libblastrampoline_jll v5.1.1+0
[8e850ede] + nghttp2_jll v1.48.0+0
[3f19e933] + p7zip_jll v17.4.0+0
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Precompiling project...
✗ GLM
✗ MixedModels
0 dependencies successfully precompiled in 26 seconds. 97 already precompiled.
3 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
ERROR: LoadError: ArgumentError: Package Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] is required but does not seem to be installed:
- Run `Pkg.instantiate()` to install all recorded dependencies.
Stacktrace:
[1] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1306
[2] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[3] macro expansion
@ .\loading.jl:1180 [inlined]
[4] macro expansion
@ .\lock.jl:223 [inlined]
[5] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[6] include
@ .\Base.jl:419 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::Nothing)
@ Base .\loading.jl:1554
[8] top-level scope
@ stdin:1
in expression starting at C:\Users\CRAN\.julia\packages\GLM\vM20T\src\GLM.jl:1
in expression starting at stdin:1
Timing stopped at: 0.02 0.05 44.08
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ────────────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Failed to precompile GLM [38e38edf-8417-5370-95a0-9cbb8c7f171a] to C:\Users\CRAN\.julia\compiled\v1.8\GLM\jl_A702.tmp.
Stacktrace:
[1] error(s::String)
@ Base .\error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
@ Base .\loading.jl:1707
[3] compilecache
@ .\loading.jl:1651 [inlined]
[4] _require(pkg::Base.PkgId)
@ Base .\loading.jl:1337
[5] _require_prelocked(uuidkey::Base.PkgId)
@ Base .\loading.jl:1200
[6] macro expansion
@ .\loading.jl:1180 [inlined]
[7] macro expansion
@ .\lock.jl:223 [inlined]
[8] require(into::Module, mod::Symbol)
@ Base .\loading.jl:1144
[9] eval
@ .\boot.jl:368 [inlined]
[10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[11] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[12] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:150
[13] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[14] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[15] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:67
[16] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\evaluating.jl:55
[17] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.4\JuliaConnectoR\Julia\communicating.jl:185
[18] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:3
Backtrace:
▆
1. ├─base::print(...) at test-model.R:10:1
2. ├─base::system.time(...)
3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3
4. ├─base::do.call(.jlme_setup, params)
5. └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE)
6. └─jlme:::load_libs(add = add)
7. └─jlme::jl("\n using StatsModels;\n using GLM;\n using MixedModels;\n ")
8. └─JuliaConnectoR::juliaEval(expr)
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.4.1
Check: tests
Result: ERROR
Running 'testthat.R' [42s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(jlme)
>
> test_check("jlme")
Starting Julia ...
Connecting to Julia TCP server at localhost:11980 ...
[1] 11980
Julia version 1.8.0 detected.
No active Julia connection. Please call `jlme_setup()`.
[1] FALSE
julia
"C:\\PROGRA~1\\Julia\\bin\\julia.exe"
Starting Julia (v1.8.0) ...
Activating new project at `D:\temp\2025_01_18_01_50_00_9286\jl_Oy2pB2`
Updating registry at `C:\Users\CRAN\.julia\registries\General.toml`
Resolving package versions...
Installed NaNMath ──────────── v1.0.3
Installed PtrArrays ────────── v1.3.0
Timing stopped at: 0.01 0 29.97
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model.R:11:3'): (code run outside of `test_that()`) ────────────
Error: Evaluation in Julia failed.
Original Julia error message:
LoadError: Error when installing package Distributions:
IOError: rm("C:\\Users\\CRAN\\.julia\\packages\\Distributions\\tQhJE\\src\\samplers"): directory not empty (ENOTEMPTY)
Stacktrace:
[1] uv_error
@ .\libuv.jl:97 [inlined]
[2] rm(path::String; force::Bool, recursive::Bool)
@ Base.Filesystem .\file.jl:306
[3] rm(path::String; force::Bool, recursive::Bool) (repeats 2 times)
@ Base.Filesystem .\file.jl:294
[4] checkfor_mv_cp_cptree(src::String, dst::String, txt::String; force::Bool)
@ Base.Filesystem .\file.jl:330
[5] #mv#15
@ .\file.jl:425 [inlined]
[6] install_archive(urls::Vector{Pair{String, Bool}}, hash::Base.SHA1, version_path::String; io::Base.PipeEndpoint)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:563
[7] macro expansion
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:761 [inlined]
[8] (::Pkg.Operations.var"#46#51"{Bool, Pkg.Types.Context, Tuple{SubString{String}, Dict{Base.UUID, Base.SHA1}}, Channel{Any}, Channel{NamedTuple{(:pkg, :urls, :path), Tuple{Pkg.Types.PackageEntry, Set{String}, String}}}})()
@ Pkg.Operations .\task.jl:484
Stacktrace:
[1] pkgerror(::String, ::Vararg{String})
@ Pkg.Types C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Types.jl:67
[2] macro expansion
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:783 [inlined]
[3] macro expansion
@ .\task.jl:454 [inlined]
[4] download_source(ctx::Pkg.Types.Context; readonly::Bool)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:724
[5] download_source
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:700 [inlined]
[6] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\Operations.jl:1278
[7] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.PipeEndpoint, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.PipeEndpoint}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:275
[8] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:156
[9] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:145
[10] #add#27
@ C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:144 [inlined]
[11] add(pkgs::Vector{String})
@ Pkg.API C:\PROGRA~1\Julia\share\julia\stdlib\v1.8\Pkg\src\API.jl:144
[12] top-level scope
@ string:4
[13] eval
@ .\boot.jl:368 [inlined]
[14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
@ Base .\loading.jl:1428
[15] include_string (repeats 2 times)
@ .\loading.jl:1438 [inlined]
[16] mainevalcmd(str::String)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:150
[17] invokelatest(::Any, ::Any, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Base .\essentials.jl:729
[18] invokelatest(::Any, ::Any, ::Vararg{Any})
@ Base .\essentials.jl:726
[19] evaluate!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:67
[20] evaluate_checked!(call::Main.RConnector.Call, communicator::Main.RConnector.CommunicatoR{Sockets.TCPSocket})
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\evaluating.jl:55
[21] serve_repl(sock::Sockets.TCPSocket)
@ Main.RConnector D:\RCompile\CRANpkg\lib\4.3\JuliaConnectoR\Julia\communicating.jl:185
[22] (::Main.RConnector.var"#3#5")()
@ Main.RConnector .\task.jl:484
in expression starting at string:4
Backtrace:
▆
1. ├─base::print(...) at test-model.R:10:1
2. ├─base::system.time(...)
3. └─jlme::jlme_setup(restart = TRUE, verbose = TRUE) at test-model.R:11:3
4. ├─base::do.call(.jlme_setup, params)
5. └─jlme (local) `<fn>`(add = NULL, threads = NULL, verbose = TRUE)
6. └─jlme:::init_proj(add = add, verbose = verbose)
7. └─jlme::jl(...)
8. └─JuliaConnectoR::juliaEval(s_interpolated)
9. └─JuliaConnectoR::juliaCall("RConnector.mainevalcmd", expr)
10. ├─base::tryCatch(...)
11. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
12. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
13. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
14. └─JuliaConnectoR:::doCallJulia(funName, jlargs)
15. └─JuliaConnectoR:::handleCallbacksAndOutput()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
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