CRAN Package Check Results for Maintainer ‘Jing Hua Zhao <jinghuazhao at hotmail.com>’

Last updated on 2026-02-15 09:51:00 CET.

Package	ERROR	NOTE	OK
gaawr2	4		10
gap	1	3	10
gap.datasets			14
lmm		2	12
pan		2	12
pQTLdata	4		10
tdthap		2	12

Package gaawr2

Current CRAN status: ERROR: 4, OK: 10

Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘gaawr2.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' running: bash -c "export message=\"Hello, world!\" echo \"print('\$message')\" > hello.R R CMD BATCH hello.R R --no-save -q < hello.R R --no-save -q <<END message <- Sys.getenv(\"message\"); print(message) source(\"hello.R\") END echo \${message} | \\ Rscript -e ' message <- scan(\"stdin\", what=\"\", sep=\"\\n\", quiet=TRUE); write.table(message, col.names=FALSE, row.names=FALSE, quote=FALSE) ' | \\ cat rm hello.*" Quitting from gaawr2.Rmd:415-421 [ensdb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gaawr2.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘gaawr2.Rmd’ --- re-building ‘web.Rmd’ using rmarkdown [WARNING] Citeproc: citation tsv not found --- finished re-building ‘web.Rmd’ SUMMARY: processing the following file failed: ‘gaawr2.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.0.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package gap

Current CRAN status: ERROR: 1, NOTE: 3, OK: 10

Additional issues

clang-ASAN gcc-ASAN

Version: 1.9
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘gap.Rmd’ using rmarkdown Read 16 records Read 9 records Read 12 records Could not fetch http://www.zotero.org/styles/nature HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/nature" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'gap.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘gap.Rmd’ --- re-building ‘shinygap.Rmd’ using rmarkdown Could not fetch http://www.zotero.org/styles/nature HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/nature" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'shinygap.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘shinygap.Rmd’ SUMMARY: processing the following files failed: ‘gap.Rmd’ ‘shinygap.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.9
Check: installed package size
Result: NOTE installed size is 8.9Mb sub-directories of 1Mb or more: doc 7.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gap.datasets

Current CRAN status: OK: 14

Package lmm

Current CRAN status: NOTE: 2, OK: 12

Version: 1.4
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Original", "by", "Joseph", "L."), family = "Schafer", role = "aut"), person(given = c("Jing", "hua"), family = "Zhao", role = "cre", email = "jinghuazhao@hotmail.com")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package pan

Current CRAN status: NOTE: 2, OK: 12

Version: 1.9
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Jing hua Zhao <jinghuazhao@hotmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Original", "by", "Joseph", "L."), family = "Schafer", role = "aut"), person(given = c("Jing", "hua"), family = "Zhao", role = "cre", email = "jinghuazhao@hotmail.com")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package pQTLdata

Current CRAN status: ERROR: 4, OK: 10

Version: 0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘pQTLdata.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' 2026-02-15 17:17:53.309 R[97609:599023] XType: Using static font registry. Quitting from pQTLdata.Rmd:125-153 [refdata] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pQTLdata.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘pQTLdata.Rmd’ SUMMARY: processing the following file failed: ‘pQTLdata.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64

Version: 0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘pQTLdata.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' Quitting from pQTLdata.Rmd:125-153 [refdata] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pQTLdata.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘pQTLdata.Rmd’ SUMMARY: processing the following file failed: ‘pQTLdata.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘pQTLdata.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' 2026-02-15 17:08:25.230 R[22211:199838] XType: Using static font registry. Quitting from pQTLdata.Rmd:125-153 [refdata] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pQTLdata.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘pQTLdata.Rmd’ SUMMARY: processing the following file failed: ‘pQTLdata.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-arm64

Package tdthap

Current CRAN status: NOTE: 2, OK: 12

Version: 1.3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Jing Hua Zhao <jinghuazhao@hotmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "David", family = "Clayton", role = "aut"), person(given = c("Jing", "Hua"), family = "Zhao", role = "cre", email = "jinghuazhao@hotmail.com")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc