CRAN Package Check Results for Maintainer ‘Jing Hua Zhao <jinghuazhao at hotmail.com>’

Last updated on 2025-04-12 20:52:17 CEST.

Package	ERROR	NOTE	OK
gaawr2	7		7
gap		6	8
gap.datasets			14
lmm			14
pan			15
pQTLdata	6	1	8
tdthap			15

Package gaawr2

Current CRAN status: ERROR: 7, OK: 7

Version: 0.0.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘gaawr2.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' running: bash -c "export message=\"Hello, world!\" echo \"print('\$message')\" > hello.R R CMD BATCH hello.R R --no-save -q < hello.R R --no-save -q <<END message <- Sys.getenv(\"message\"); print(message) source(\"hello.R\") END echo \${message} | \\ Rscript -e ' message <- scan(\"stdin\", what=\"\", sep=\"\\n\", quiet=TRUE); write.table(message, col.names=FALSE, row.names=FALSE, quote=FALSE) ' | \\ cat rm hello.*" Quitting from gaawr2.Rmd:409-415 [ensdb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gaawr2.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘gaawr2.Rmd’ --- re-building ‘web.Rmd’ using rmarkdown [WARNING] Citeproc: citation tsv not found --- finished re-building ‘web.Rmd’ SUMMARY: processing the following file failed: ‘gaawr2.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-macos-arm64, r-devel-macos-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.0.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'gaawr2.Rmd' using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' running: bash -c "export message=\"Hello, world!\" echo \"print('$message')\" > hello.R R CMD BATCH hello.R R --no-save -q < hello.R R --no-save -q <<END message <- Sys.getenv(\"message\"); print(message) source(\"hello.R\") END echo ${message} | \ Rscript -e ' message <- scan(\"stdin\", what=\"\", sep=\"\n\", quiet=TRUE); write.table(message, col.names=FALSE, row.names=FALSE, quote=FALSE) ' | \ cat rm hello.*" Quitting from gaawr2.Rmd:409-415 [ensdb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gaawr2.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building 'gaawr2.Rmd' --- re-building 'web.Rmd' using rmarkdown [WARNING] Citeproc: citation tsv not found --- finished re-building 'web.Rmd' SUMMARY: processing the following file failed: 'gaawr2.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package gap

Current CRAN status: NOTE: 6, OK: 8

Version: 1.6
Check: installed package size
Result: NOTE installed size is 9.0Mb sub-directories of 1Mb or more: doc 7.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gap.datasets

Current CRAN status: OK: 14

Package lmm

Current CRAN status: OK: 14

Package pan

Current CRAN status: OK: 15

Package pQTLdata

Current CRAN status: ERROR: 6, NOTE: 1, OK: 8

Version: 0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘pQTLdata.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' Failed with error: 'there is no package called 'org.Hs.eg.db'' Quitting from pQTLdata.Rmd:125-153 [refdata] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pQTLdata.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘pQTLdata.Rmd’ SUMMARY: processing the following file failed: ‘pQTLdata.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-macos-arm64

Version: 0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘pQTLdata.Rmd’ using rmarkdown Failed with error: 'there is no package called 'EnsDb.Hsapiens.v75'' Quitting from pQTLdata.Rmd:125-153 [refdata] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- Backtrace: ▆ 1. ├─ensembldb::metadata(EnsDb.Hsapiens.v75) 2. └─base::.handleSimpleError(...) 3. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pQTLdata.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'metadata': object 'EnsDb.Hsapiens.v75' not found --- failed re-building ‘pQTLdata.Rmd’ SUMMARY: processing the following file failed: ‘pQTLdata.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-macos-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.5
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package tdthap

Current CRAN status: OK: 15