CRAN Package Check Results for Maintainer ‘Jeff Laake <jefflaake at gmail.com>’

Last updated on 2024-05-02 01:57:39 CEST.

Package	ERROR	OK
marked		12
RMark	3	9

Package marked

Current CRAN status: OK: 12

Package RMark

Current CRAN status: ERROR: 3, OK: 9

Additional issues

donttest

Version: 3.0.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: Warning: Software mark not found in path. Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.0.0
Check: whether startup messages can be suppressed
Result: NOTE Warning: Software mark not found in path. If you have mark executable, you will need to set MarkPath object to its location (e.g. MarkPath="C:/Users/Jeff Laake/Desktop" It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. Flavor: r-release-macos-arm64

Version: 3.0.0
Check: examples
Result: ERROR Running examples in ‘RMark-Ex.R’ failed The error most likely occurred in: > ### Name: Blackduck > ### Title: Black duck known fate data > ### Aliases: Blackduck > ### Keywords: datasets > > ### ** Examples > > > data(Blackduck) > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are > # no longer allowed. They can work as in this example but they can be misleading > # and fail if the levels are non-numeric. The real parameters will remain > # unchanged but the betas will be different. > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1 > run.Blackduck=function() + { + # + # Process data + # + bduck.processed=process.data(Blackduck,model="Known") + # + # Create default design data + # + bduck.ddl=make.design.data(bduck.processed) + # + # Add occasion specific data min < 0; I have no idea what it is + # + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5) + # + # Define range of models for S + # + S.dot=list(formula=~1) + S.time=list(formula=~time) + S.min=list(formula=~min) + S.BirdAge=list(formula=~BirdAge) + # + # Note that in the following model in the MARK example, the covariates + # have been standardized. That means that the beta parameters will be different + # for BirdAge, Weight and their interaction but the likelihood and real parameter + # estimates are the same. + # + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight) + S.BirdAge.Weight=list(formula=~BirdAge+Weight) + # + # Create model list and run assortment of models + # + model.list=create.model.list("Known") + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl, + invisible=FALSE,threads=1,delete=TRUE) + + # + # Return model table and list of models + # + return(bduck.results) + } > bduck.results=run.Blackduck() S.BirdAge sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAge.Weight sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAgexWeight.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.dot sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.time sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe No mark models found Error in collect.models() : Calls: run.Blackduck -> mark.wrapper -> collect.models Execution halted Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.0.0
Check: startup messages can be suppressed
Result: NOTE Warning: Software mark not found in path. If you have mark executable, you will need to set MarkPath object to its location (e.g. MarkPath="C:/Users/Jeff Laake/Desktop" It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64