CRAN Package Check Results for Package RMark

Last updated on 2026-07-03 17:53:18 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	3.0.8	19.82	147.15	166.97	OK	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc	3.0.8	12.21	104.20	116.41	OK	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang	3.0.8	38.00	251.58	289.58	OK
r-devel-linux-x86_64-fedora-gcc	3.0.8	33.00	235.79	268.79	OK
r-devel-windows-x86_64	3.0.8	24.00	200.00	224.00	OK
r-patched-linux-x86_64	3.0.8	18.41	131.17	149.58	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-linux-x86_64	3.0.8				OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-macos-arm64	3.0.8	5.00	32.00	37.00	ERROR
r-release-macos-x86_64	3.0.8	14.00	116.00	130.00	ERROR
r-release-windows-x86_64	3.0.8	22.00	181.00	203.00	OK
r-oldrel-macos-arm64	3.0.8	4.00	35.00	39.00	ERROR
r-oldrel-macos-x86_64	3.0.8	13.00	122.00	135.00	ERROR
r-oldrel-windows-x86_64	3.0.8	31.00	212.00	243.00	OK

Check Details

Version: 3.0.8
Check: examples
Result: ERROR Running examples in ‘RMark-Ex.R’ failed The error most likely occurred in: > ### Name: Blackduck > ### Title: Black duck known fate data > ### Aliases: Blackduck > ### Keywords: datasets > > ### ** Examples > > > data(Blackduck) > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are > # no longer allowed. They can work as in this example but they can be misleading > # and fail if the levels are non-numeric. The real parameters will remain > # unchanged but the betas will be different. > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1 > run.Blackduck=function() + { + # + # Process data + # + bduck.processed=process.data(Blackduck,model="Known") + # + # Create default design data + # + bduck.ddl=make.design.data(bduck.processed) + # + # Add occasion specific data min < 0; I have no idea what it is + # + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5) + # + # Define range of models for S + # + S.dot=list(formula=~1) + S.time=list(formula=~time) + S.min=list(formula=~min) + S.BirdAge=list(formula=~BirdAge) + # + # Note that in the following model in the MARK example, the covariates + # have been standardized. That means that the beta parameters will be different + # for BirdAge, Weight and their interaction but the likelihood and real parameter + # estimates are the same. + # + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight) + S.BirdAge.Weight=list(formula=~BirdAge+Weight) + # + # Create model list and run assortment of models + # + model.list=create.model.list("Known") + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl, + invisible=FALSE,threads=1,delete=TRUE) + + # + # Return model table and list of models + # + return(bduck.results) + } > bduck.results=run.Blackduck() S.BirdAge sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAge.Weight sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAgexWeight.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.dot sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.time sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe No mark models found Error in collect.models() : Calls: run.Blackduck -> mark.wrapper -> collect.models Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64