CRAN Package Check Results for Maintainer ‘Gregory Jefferis <jefferis at gmail.com>’

Last updated on 2025-04-12 20:52:17 CEST.

Package	ERROR	NOTE	OK
bmp			14
colorRamps			14
dendroextras			14
dracor		4	10
IgorR		4	10
nabor		4	11
nat		4	11
nat.nblast	1	4	10
nat.templatebrains		4	11
nat.utils			15
natcpp			15
natmanager		4	11
RANN			14
readbitmap			15
readobj			15

Package bmp

Current CRAN status: OK: 14

Package colorRamps

Current CRAN status: OK: 14

Package dendroextras

Current CRAN status: OK: 14

Package dracor

Current CRAN status: NOTE: 4, OK: 10

Additional issues

donttest

Version: 0.2.6
Check: installed package size
Result: NOTE installed size is 12.4Mb sub-directories of 1Mb or more: libs 12.2Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package IgorR

Current CRAN status: NOTE: 4, OK: 10

Version: 0.9.0
Check: R code for possible problems
Result: NOTE Found the following assignments to the global environment: File ‘IgorR/R/ReadIgorBinary.R’: assign(WaveName, rval, envir = .GlobalEnv) Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Package nabor

Current CRAN status: NOTE: 4, OK: 11

Version: 0.5.0
Check: installed package size
Result: NOTE installed size is 9.0Mb sub-directories of 1Mb or more: libs 8.9Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package nat

Current CRAN status: NOTE: 4, OK: 11

Version: 1.8.24
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: as.mesh3d.Rd: rgl boundingbox.Rd: mesh3d cmtk.reformatx.Rd: RunCmdForNewerInput, makelock find.neuron.Rd: select3d find.soma.Rd: select3d nat-package.Rd: igraph, select3d, rgl ndigest.Rd: digest neuron.Rd: dfs ngraph.Rd: igraph nopen3d.Rd: open3d nview3d.Rd: view3d pan3d.Rd: rgl.setMouseCallbacks seglist.Rd: igraph Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package nat.nblast

Current CRAN status: ERROR: 1, NOTE: 4, OK: 10

Version: 1.6.7
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: WeightedNNBasedLinesetMatching.Rd: dotprops, neuron nat.nblast-package.Rd: neuronlist, neuronlistfh nblast.Rd: nat-package, plyr nblast_allbyall.Rd: neuronlist neuron_pairs.Rd: neuronlist plot3d.hclust.Rd: slice, colour_clusters Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 1.6.7
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘NBLAST-Clustering.Rmd’ using rmarkdown Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. 2023-07-10 21:31:32.757 R[43986:2287591920] XType: Using static font registry. Quitting from lines 57-60 [unnamed-chunk-5] (NBLAST-Clustering.Rmd) Error: processing vignette 'NBLAST-Clustering.Rmd' failed with diagnostics: Saving a widget with selfcontained = TRUE requires pandoc. See here to learn more https://bookdown.org/yihui/rmarkdown-cookbook/install-pandoc.html --- failed re-building ‘NBLAST-Clustering.Rmd’ SUMMARY: processing the following file failed: ‘NBLAST-Clustering.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-macos-x86_64

Package nat.templatebrains

Current CRAN status: NOTE: 4, OK: 11

Version: 1.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: fit_xform.Rd: xform, xyzmatrix, computeTransform fit_xform_brain.Rd: computeTransform guess_templatebrain.Rd: im3d local_reg_dir_for_url.Rd: user_data_dir xform_brain.Rd: cmtk.reformatx, xform, xformpoints, xformimage Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package nat.utils

Current CRAN status: OK: 15

Package natcpp

Current CRAN status: OK: 15

Package natmanager

Current CRAN status: NOTE: 4, OK: 11

Version: 0.5.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: install.Rd: pak selfupdate.Rd: pak Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package RANN

Current CRAN status: OK: 14

Package readbitmap

Current CRAN status: OK: 15

Package readobj

Current CRAN status: OK: 15