CRAN Package Check Results for Maintainer ‘J. Derek Tucker <jdtuck at sandia.gov>’

Last updated on 2024-05-02 01:57:39 CEST.

Package	ERROR	NOTE	OK
fdasrvf	1	4	8
stpphawkes		3	9

Package fdasrvf

Current CRAN status: ERROR: 1, NOTE: 4, OK: 8

Version: 2.2.0
Check: examples
Result: ERROR Running examples in 'fdasrvf-Ex.R' failed The error most likely occurred in: > ### Name: pair_align_functions_bayes > ### Title: Align two functions > ### Aliases: pair_align_functions_bayes > ### Keywords: bayesian > > ### ** Examples > > out <- pair_align_functions_bayes( + f1 = simu_data$f[, 1], + f2 = simu_data$f[, 2], + timet = simu_data$time + ) Resampling as number of points on q function = 101 is not a multiple of times = 5. Error in .Call("dpcode", PACKAGE = "fdasrvf", q1, q1L, q2L, times, cut) : "dpcode" not available for .Call() for package "fdasrvf" Calls: pair_align_functions_bayes -> dpcode Execution halted Flavor: r-devel-windows-x86_64

Version: 2.2.0
Check: tests
Result: ERROR Running 'testthat.R' [15s] Running the tests in 'tests/testthat.R' failed. Complete output: > if (requireNamespace("testthat", quietly = TRUE)){ + library(fdasrvf) + + testthat::test_check("fdasrvf") + testthat::snapshot_accept(files = NULL, path = "testthat") + } else{ + stop("Need testthat to run checks") + } i Initializing... i Aligning 21 functions in SRVF space to 3 fPCA components... i Starting iteration 1... i Starting iteration 2... i Starting iteration 3... i Starting iteration 4... i Starting iteration 5... [1] 0.15604919 0.06564122 0.03321528 0.03182538 0.00000000 0.00000000 [7] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [13] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [19] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [25] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [31] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [37] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [43] 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 [49] 0.00000000 0.00000000 0.00000000 i Using lambda = 0 i Initializing... i Computing Karcher mean of 21 functions in SRSF space... i Entering iteration 1... ! The argument `x` is of class <fdawarp> but has not been computed using the median as centroid type. i Rerunning `time_warping()` with `centroid_type = "median"`... i Using lambda = 0 i Initializing... i Computing Karcher median of 21 functions in SRSF space... i Entering iteration 1... ! The argument `x` is of class <fdawarp> but has not been computed using the median as centroid type. i Rerunning `time_warping()` with `centroid_type = "median"`... i Using lambda = 0 i Initializing... i Computing Karcher median of 21 functions in SRSF space... i Entering iteration 1... i Using lambda = 0 i Initializing... i Computing Karcher mean of 21 functions in SRSF space... i Entering iteration 1... ! The maximal number of iterations has been reached. [ FAIL 7 | WARN 0 | SKIP 4 | PASS 79 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-align-fpca.R:21:3', 'test-boxplot.R:36:3', 'test-kmeans.R:25:3', 'test-time-warping.R:30:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pair_align_functions_bayes.R:6:3'): Verify pair_align_functions_bayes() works as intended ── Error in `.Call("dpcode", PACKAGE = "fdasrvf", q1, q1L, q2L, times, cut)`: "dpcode" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. └─fdasrvf::pair_align_functions_bayes(...) at test_pair_align_functions_bayes.R:6:3 2. └─fdasrvf:::dpcode(qt1_5[row], qt1_5, qt2_5, times, cut) ── Error ('test_pair_align_functions_expomap.R:10:3'): Verify pair_align_functions_expomap() works as intended ── Error in `.Call("order_l2norm", PACKAGE = "fdasrvf", x, y)`: "order_l2norm" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. └─fdasrvf::pair_align_functions_expomap(...) at test_pair_align_functions_expomap.R:10:3 2. └─fdasrvf:::f.exp1(...) 3. ├─fdasrvf:::calcY(f.L2norm(g), g$y) 4. └─fdasrvf:::f.L2norm(g) 5. └─fdasrvf:::order_l2norm(f$x, f$y) ── Error ('test_pair_align_functions_expomap.R:59:3'): Verify init.coef arguments work correctly ── Error in `.Call("order_l2norm", PACKAGE = "fdasrvf", x, y)`: "order_l2norm" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. └─fdasrvf::pair_align_functions_expomap(...) at test_pair_align_functions_expomap.R:59:3 2. └─fdasrvf:::f.exp1(...) 3. ├─fdasrvf:::calcY(f.L2norm(g), g$y) 4. └─fdasrvf:::f.L2norm(g) 5. └─fdasrvf:::order_l2norm(f$x, f$y) ── Error ('test_pair_align_functions_expomap.R:91:3'): Check calcY() works as intended ── Error in `.Call("calcY", PACKAGE = "fdasrvf", area, gy)`: "calcY" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. ├─testthat::expect_equal(sum(fdasrvf:::calcY(2, 0:2)), 0.1155056305) at test_pair_align_functions_expomap.R:91:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─fdasrvf:::calcY(2, 0:2) ── Error ('test_pair_align_functions_expomap.R:96:3'): Check cuL2norm2() works as intended ── Error in `.Call("cuL2norm2", PACKAGE = "fdasrvf", x, y)`: "cuL2norm2" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. ├─testthat::expect_equal(prod(fdasrvf:::cuL2norm2(0:2, 1:3)), 22.5) at test_pair_align_functions_expomap.R:96:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─fdasrvf:::cuL2norm2(0:2, 1:3) ── Error ('test_pair_align_functions_expomap.R:102:3'): Check trapzCpp() works as intended ── Error in `.Call("trapzCpp", PACKAGE = "fdasrvf", x, y)`: "trapzCpp" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. ├─testthat::expect_equal(fdasrvf:::trapzCpp(0:2, 1:3), 4) at test_pair_align_functions_expomap.R:102:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─fdasrvf:::trapzCpp(0:2, 1:3) ── Error ('test_pair_align_functions_expomap.R:108:3'): Check order_l2norm() works as intended ── Error in `.Call("order_l2norm", PACKAGE = "fdasrvf", x, y)`: "order_l2norm" not available for .Call() for package "fdasrvf" Backtrace: ▆ 1. ├─testthat::expect_equal(fdasrvf:::order_l2norm(0:2, 1:3), 3) at test_pair_align_functions_expomap.R:108:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─fdasrvf:::order_l2norm(0:2, 1:3) [ FAIL 7 | WARN 0 | SKIP 4 | PASS 79 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 2.2.0
Check: installed package size
Result: NOTE installed size is 7.4Mb sub-directories of 1Mb or more: data 2.3Mb libs 4.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package stpphawkes

Current CRAN status: NOTE: 3, OK: 9

Version: 0.2.1
Check: installed package size
Result: NOTE installed size is 10.4Mb sub-directories of 1Mb or more: libs 10.2Mb Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64