Last updated on 2026-01-21 05:52:00 CET.
| Package | ERROR | OK |
|---|---|---|
| deltaccd | 13 | |
| limorhyde | 5 | 8 |
| limorhyde2 | 3 | 10 |
| phers | 4 | 9 |
| pmparser | 13 | |
| simphony | 13 | |
| spectr | 13 | |
| tipa | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 5, OK: 8
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:21-30 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:21-30 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from introduction.Rmd:21-29 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'org.Mm.eg.db'
---
Backtrace:
▆
1. └─base::library("org.Mm.eg.db")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
there is no package called 'org.Mm.eg.db'
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 1.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavor: r-oldrel-macos-arm64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘differential-rhythmicity.Rmd’ using rmarkdown
Quitting from differential-rhythmicity.Rmd:25-33 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'differential-rhythmicity.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘differential-rhythmicity.Rmd’
--- re-building ‘rhythmicity.Rmd’ using rmarkdown
Quitting from rhythmicity.Rmd:25-33 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rhythmicity.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘rhythmicity.Rmd’
--- re-building ‘rnaseq.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘rnaseq.Rmd’
--- re-building ‘uncertainty.Rmd’ using rmarkdown
Quitting from uncertainty.Rmd:27-36 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'uncertainty.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘uncertainty.Rmd’
SUMMARY: processing the following files failed:
‘differential-rhythmicity.Rmd’ ‘rhythmicity.Rmd’ ‘uncertainty.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘differential-rhythmicity.Rmd’ using rmarkdown
Quitting from differential-rhythmicity.Rmd:25-33 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'differential-rhythmicity.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘differential-rhythmicity.Rmd’
--- re-building ‘rhythmicity.Rmd’ using rmarkdown
Quitting from rhythmicity.Rmd:25-33 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rhythmicity.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘rhythmicity.Rmd’
--- re-building ‘rnaseq.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘rnaseq.Rmd’
--- re-building ‘uncertainty.Rmd’ using rmarkdown
Quitting from uncertainty.Rmd:27-36 [load_packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'qs'
---
Backtrace:
▆
1. └─base::library("qs")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'uncertainty.Rmd' failed with diagnostics:
there is no package called 'qs'
--- failed re-building ‘uncertainty.Rmd’
SUMMARY: processing the following files failed:
‘differential-rhythmicity.Rmd’ ‘rhythmicity.Rmd’ ‘uncertainty.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: ERROR: 4, OK: 9
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phers)
>
> test_check('phers')
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error in `library()`:
! there is no package called 'qs'
Backtrace:
▆
1. ├─testthat::test_check("phers")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─base::library("qs") at ./setup.R:3:1
15. │ └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
16. └─testthat (local) `<fn>`(`<S3: packageNotFoundError>`)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phers)
>
> test_check('phers')
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error in `library()`:
! there is no package called 'qs'
Backtrace:
▆
1. ├─testthat::test_check("phers")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─base::library("qs") at ./setup.R:3:1
15. │ └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
16. └─testthat (local) `<fn>`(`<S3: packageNotFoundError>`)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phers)
>
> test_check('phers')
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error in `library()`:
! there is no package called 'qs'
Backtrace:
▆
1. ├─testthat::test_check("phers")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─base::library("qs") at ./setup.R:3:1
15. │ └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
16. └─testthat (local) `<fn>`(`<S3: packageNotFoundError>`)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(phers)
>
> test_check('phers')
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Error in `source_dir()`:
! Failed to evaluate './setup.R'.
Caused by error in `library()`:
! there is no package called 'qs'
Backtrace:
▆
1. ├─testthat::test_check("phers")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─base::library("qs") at ./setup.R:3:1
15. │ └─base::stop(packageNotFoundError(package, lib.loc, sys.call()))
16. └─testthat (local) `<fn>`(`<pckgNtFE>`)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
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