CRAN Package Check Results for Package ivolcano

Last updated on 2026-06-13 23:52:29 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.0.6	8.86	281.04	289.90	OK
r-devel-linux-x86_64-debian-gcc	0.0.6	5.85	196.34	202.19	OK
r-devel-linux-x86_64-fedora-clang	0.0.6	12.00	443.38	455.38	OK
r-devel-linux-x86_64-fedora-gcc	0.0.6	13.00	481.67	494.67	OK
r-devel-windows-x86_64	0.0.6	13.00	311.00	324.00	OK
r-patched-linux-x86_64	0.0.6	6.23	275.32	281.55	OK
r-release-linux-x86_64	0.0.6	6.01	271.09	277.10	OK
r-release-macos-arm64	0.0.6	2.00	36.00	38.00	OK
r-release-macos-x86_64	0.0.6	6.00	90.00	96.00	OK
r-release-windows-x86_64	0.0.6	14.00	111.00	125.00	ERROR
r-oldrel-macos-arm64	0.0.6	2.00	31.00	33.00	OK
r-oldrel-macos-x86_64	0.0.6	6.00	142.00	148.00	OK
r-oldrel-windows-x86_64	0.0.6	18.00	410.00	428.00	OK

Check Details

Version: 0.0.6
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'ivolcano.qmd' using html processing file: ivolcano.qmd Error: ! No esummary records found in file Backtrace: ▆ 1. └─fanyi::gene_summary(top_eg) 2. └─fanyi:::gene_summary_ncbi(entrez) 3. └─fanyi:::.get_entrez_summary(newitem) 4. └─rentrez::entrez_summary(db = "gene", id = entrez) 5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list) 6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list) Quitting from ivolcano.qmd:106-126 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! No esummary records found in file --- Backtrace: ▆ 1. └─fanyi::gene_summary(top_eg) 2. └─fanyi:::gene_summary_ncbi(entrez) 3. └─fanyi:::.get_entrez_summary(newitem) 4. └─rentrez::entrez_summary(db = "gene", id = entrez) 5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list) 6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted WARN: Error encountered when rendering files Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: ivolcano.qmd Error: ! No esummary records found in file Backtrace: ▆ 1. └─fanyi::gene_summary(top_eg) 2. └─fanyi:::gene_summary_ncbi(entrez) 3. └─fanyi:::.get_entrez_summary(newitem) 4. └─rentrez::entrez_summary(db = "gene", id = entrez) 5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list) 6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list) Quitting from ivolcano.qmd:106-126 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! No esummary records found in file --- Backtrace: ▆ 1. └─fanyi::gene_summary(top_eg) 2. └─fanyi:::gene_summary_ncbi(entrez) 3. └─fanyi:::.get_entrez_summary(newitem) 4. └─rentrez::entrez_summary(db = "gene", id = entrez) 5. ├─rentrez:::parse_esummary(whole_record, v, always_return_list) 6. └─rentrez:::parse_esummary.list(whole_record, v, always_return_list) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted WARN: Error encountered when rendering files Caused by error in `processx::run()`: ! System command 'quarto.exe' failed --- failed re-building 'ivolcano.qmd' SUMMARY: processing the following file failed: 'ivolcano.qmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64