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Last updated on 2026-04-30 11:56:57 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.14.0 | 34.23 | 287.94 | 322.17 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.14.0 | 22.73 | 196.23 | 218.96 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.14.0 | 64.00 | 737.43 | 801.43 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.14.0 | 64.00 | 742.60 | 806.60 | ERROR | |
| r-devel-windows-x86_64 | 2.14.0 | 47.00 | 314.00 | 361.00 | OK | |
| r-patched-linux-x86_64 | 2.14.0 | 36.30 | 265.76 | 302.06 | OK | |
| r-release-linux-x86_64 | 2.14.0 | 35.31 | 271.35 | 306.66 | OK | |
| r-release-macos-arm64 | 2.14.0 | 8.00 | 128.00 | 136.00 | OK | |
| r-release-macos-x86_64 | 2.14.0 | 25.00 | 468.00 | 493.00 | OK | |
| r-release-windows-x86_64 | 2.14.0 | 41.00 | 309.00 | 350.00 | OK | |
| r-oldrel-macos-arm64 | 2.14.0 | 8.00 | 69.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.14.0 | 25.00 | 237.00 | 262.00 | OK | |
| r-oldrel-windows-x86_64 | 2.14.0 | 56.00 | 390.00 | 446.00 | OK |
Version: 2.14.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [189s/504s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (require(testthat, quietly = TRUE)) {
+ test_check("inlabru")
+ }
Loading required package: inlabru
Loading required package: fmesher
Starting 2 test processes.
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test-component-407.R
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test-data-76.R
> test-environment.R: Test message 1
> test-environment.R: Test message 2
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 4 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 4 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test-aggregate-309.R
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
[ FAIL 3 | WARN 0 | SKIP 56 | PASS 176 ]
══ Skipped tests (56) ══════════════════════════════════════════════════════════
• On CRAN (55): 'test-01_lgcp_2d.R:2:3', 'test-01_lgcp_2d.R:140:3',
'test-02_predict.R:2:3', 'test-02_predict.R:128:3', 'test-additive.R:2:3',
'test-bru_sf.R:4:3', 'test-component.R:226:3', 'test-component.R:294:3',
'test-component.R:322:3', 'test-component.R:361:3', 'test-component.R:417:3',
'test-copy.R:2:3', 'test-copy.R:126:3', 'test-copy.R:188:3',
'test-data.R:5:3', 'test-data.R:87:3', 'test-fmesher_pixels.R:2:3',
'test-globe_mesh.R:2:3', 'test-globe_mesh.R:62:3', 'test-latent_ar1.R:75:3',
'test-latent_clinear.R:2:3', 'test-latent_factor.R:2:3',
'test-latent_factor.R:103:3', 'test-latent_fixed_effects.R:2:3',
'test-latent_fixed_effects.R:24:3', 'test-latent_fixed_effects.R:50:3',
'test-latent_fixed_effects.R:71:3', 'test-latent_fixed_effects.R:98:3',
'test-latent_linear.R:2:3', 'test-latent_linear.R:34:3',
'test-latent_rw2.R:2:3', 'test-latent_rw2.R:32:3',
'test-latent_spde_1d.R:31:3', 'test-latent_spde_2d.R:2:3',
'test-latent_spde_2d.R:97:3', 'test-lgcp_1d.R:28:3', 'test-lgcp_1d.R:105:3',
'test-lgcp_1d.R:156:3', 'test-lgcp_1d_nonlinear.R:2:3',
'test-lgcp_1d_nonlinear.R:169:3', 'test-lgcp_2d_covars.R:2:3',
'test-lgcp_2d_plotsample.R:2:3', 'test-linearisation.R:2:3',
'test-mapper.R:435:3', 'test-mapper.R:449:3', 'test-mapper.R:505:3',
'test-mapper.R:611:3', 'test-mapper.R:753:3', 'test-mapper.R:781:3',
'test-multi_like.R:2:3', 'test-multi_like.R:55:3', 'test-offset.R:2:3',
'test-response_size.R:2:3', 'test-response_size.R:82:3', 'test-utils.R:2:3'
• {stars} is not installed (1): 'test-eval_spatial.R:153:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-component.R:407:7'): Component construction: unsafe intercepts ──
Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-component.R:405:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─inlabru::bru_model(cmp, bru_obs_list(list(lik))) at test-component.R:407:7
8. ├─inlabru::bru_comp_list(...)
9. └─inlabru:::bru_comp_list.bru_comp_list(...)
10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)
11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)
12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)
13. └─inlabru:::add_mappers.bru_comp_list(...)
14. ├─inlabru::add_mappers(...)
15. └─inlabru:::add_mappers.bru_comp(...)
16. └─inlabru:::add_mapper(...)
17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)
18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)
19. ├─base::sort(unique(unlist(inp)), na.last = NA)
20. └─base::sort.default(unique(unlist(inp)), na.last = NA)
21. └─base::sort.int(...)
── Error ('test-data.R:76:7'): Component construction: unsafe intercepts, data is list ──
Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-data.R:74:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─inlabru::bru_model(cmp, bru_obs_list(list(lik))) at test-data.R:76:7
8. ├─inlabru::bru_comp_list(...)
9. └─inlabru:::bru_comp_list.bru_comp_list(...)
10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)
11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)
12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)
13. └─inlabru:::add_mappers.bru_comp_list(...)
14. ├─inlabru::add_mappers(...)
15. └─inlabru:::add_mappers.bru_comp(...)
16. └─inlabru:::add_mapper(...)
17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)
18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)
19. ├─base::sort(unique(unlist(inp)), na.last = NA)
20. └─base::sort.default(unique(unlist(inp)), na.last = NA)
21. └─base::sort.int(...)
── Error ('test-aggregate.R:290:7'): Aggregated Gaussian observations, using domain/samplers feature ──
Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-aggregate.R:288:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─inlabru::bru_model(...) at test-aggregate.R:290:7
8. ├─inlabru::bru_comp_list(...)
9. └─inlabru:::bru_comp_list.bru_comp_list(...)
10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)
11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)
12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)
13. └─inlabru:::add_mappers.bru_comp_list(...)
14. ├─inlabru::add_mappers(...)
15. └─inlabru:::add_mappers.bru_comp(...)
16. └─inlabru:::add_mapper(...)
17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)
18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)
19. ├─base::sort(unique(unlist(inp)), na.last = NA)
20. └─base::sort.default(unique(unlist(inp)), na.last = NA)
21. └─base::sort.int(...)
[ FAIL 3 | WARN 0 | SKIP 56 | PASS 176 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.14.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [183s/255s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (require(testthat, quietly = TRUE)) {
+ test_check("inlabru")
+ }
Loading required package: inlabru
Loading required package: fmesher
Starting 2 test processes.
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test-component-407.R
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test-data-76.R
> test-environment.R: Test message 1
> test-environment.R: Test message 2
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-aggregate.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-aggregate.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-aggregate.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test-aggregate-309.R
> test-mdata.R: OMP: Warning #96: Cannot form a team with 4 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 4 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
> test-mdata.R: OMP: Warning #96: Cannot form a team with 3 threads, using 2 instead.
> test-mdata.R: OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_
> test-mdata.R: ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
[ FAIL 3 | WARN 0 | SKIP 55 | PASS 182 ]
══ Skipped tests (55) ══════════════════════════════════════════════════════════
• On CRAN (55): 'test-01_lgcp_2d.R:2:3', 'test-01_lgcp_2d.R:140:3',
'test-02_predict.R:2:3', 'test-02_predict.R:128:3', 'test-additive.R:2:3',
'test-bru_sf.R:4:3', 'test-component.R:226:3', 'test-component.R:294:3',
'test-component.R:322:3', 'test-component.R:361:3', 'test-component.R:417:3',
'test-copy.R:2:3', 'test-copy.R:126:3', 'test-copy.R:188:3',
'test-data.R:5:3', 'test-data.R:87:3', 'test-fmesher_pixels.R:2:3',
'test-globe_mesh.R:2:3', 'test-globe_mesh.R:62:3', 'test-latent_ar1.R:75:3',
'test-latent_clinear.R:2:3', 'test-latent_factor.R:2:3',
'test-latent_factor.R:103:3', 'test-latent_fixed_effects.R:2:3',
'test-latent_fixed_effects.R:24:3', 'test-latent_fixed_effects.R:50:3',
'test-latent_fixed_effects.R:71:3', 'test-latent_fixed_effects.R:98:3',
'test-latent_linear.R:2:3', 'test-latent_linear.R:34:3',
'test-latent_rw2.R:2:3', 'test-latent_rw2.R:32:3',
'test-latent_spde_1d.R:31:3', 'test-latent_spde_2d.R:2:3',
'test-latent_spde_2d.R:97:3', 'test-lgcp_1d.R:28:3', 'test-lgcp_1d.R:105:3',
'test-lgcp_1d.R:156:3', 'test-lgcp_1d_nonlinear.R:2:3',
'test-lgcp_1d_nonlinear.R:169:3', 'test-lgcp_2d_covars.R:2:3',
'test-lgcp_2d_plotsample.R:2:3', 'test-linearisation.R:2:3',
'test-mapper.R:435:3', 'test-mapper.R:449:3', 'test-mapper.R:505:3',
'test-mapper.R:611:3', 'test-mapper.R:753:3', 'test-mapper.R:781:3',
'test-multi_like.R:2:3', 'test-multi_like.R:55:3', 'test-offset.R:2:3',
'test-response_size.R:2:3', 'test-response_size.R:82:3', 'test-utils.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-component.R:407:7'): Component construction: unsafe intercepts ──
Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-component.R:405:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─inlabru::bru_model(cmp, bru_obs_list(list(lik))) at test-component.R:407:7
8. ├─inlabru::bru_comp_list(...)
9. └─inlabru:::bru_comp_list.bru_comp_list(...)
10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)
11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)
12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)
13. └─inlabru:::add_mappers.bru_comp_list(...)
14. ├─inlabru::add_mappers(...)
15. └─inlabru:::add_mappers.bru_comp(...)
16. └─inlabru:::add_mapper(...)
17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)
18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)
19. ├─base::sort(unique(unlist(inp)), na.last = NA)
20. └─base::sort.default(unique(unlist(inp)), na.last = NA)
21. └─base::sort.int(...)
── Error ('test-data.R:76:7'): Component construction: unsafe intercepts, data is list ──
Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-data.R:74:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─inlabru::bru_model(cmp, bru_obs_list(list(lik))) at test-data.R:76:7
8. ├─inlabru::bru_comp_list(...)
9. └─inlabru:::bru_comp_list.bru_comp_list(...)
10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)
11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)
12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)
13. └─inlabru:::add_mappers.bru_comp_list(...)
14. ├─inlabru::add_mappers(...)
15. └─inlabru:::add_mappers.bru_comp(...)
16. └─inlabru:::add_mapper(...)
17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)
18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)
19. ├─base::sort(unique(unlist(inp)), na.last = NA)
20. └─base::sort.default(unique(unlist(inp)), na.last = NA)
21. └─base::sort.int(...)
── Error ('test-aggregate.R:290:7'): Aggregated Gaussian observations, using domain/samplers feature ──
Error in `sort.int(x, na.last = na.last, decreasing = decreasing, ...)`: 'x' must be atomic
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-aggregate.R:288:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─inlabru::bru_model(...) at test-aggregate.R:290:7
8. ├─inlabru::bru_comp_list(...)
9. └─inlabru:::bru_comp_list.bru_comp_list(...)
10. ├─inlabru::bru_comp_list(list(object), .envir = .envir, ...)
11. └─inlabru:::bru_comp_list.list(list(object), .envir = .envir, ...)
12. ├─inlabru::add_mappers(object, lhoods = lhoods, inputs = inputs)
13. └─inlabru:::add_mappers.bru_comp_list(...)
14. ├─inlabru::add_mappers(...)
15. └─inlabru:::add_mappers.bru_comp(...)
16. └─inlabru:::add_mapper(...)
17. └─inlabru:::make_unique_inputs(inp_, allow_list = TRUE)
18. └─inlabru:::make_unique_inputs(inp_, allow_list = FALSE)
19. ├─base::sort(unique(unlist(inp)), na.last = NA)
20. └─base::sort.default(unique(unlist(inp)), na.last = NA)
21. └─base::sort.int(...)
[ FAIL 3 | WARN 0 | SKIP 55 | PASS 182 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
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