Last updated on 2026-02-13 21:51:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 10.45 | 92.43 | 102.88 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 6.98 | 69.27 | 76.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 17.00 | 146.95 | 163.95 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 17.00 | 151.86 | 168.86 | OK | |
| r-devel-macos-arm64 | 1.0.4 | 2.00 | 31.00 | 33.00 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 13.00 | 112.00 | 125.00 | OK | |
| r-patched-linux-x86_64 | 1.0.4 | 9.78 | 86.99 | 96.77 | ERROR | |
| r-release-linux-x86_64 | 1.0.4 | 9.48 | 87.09 | 96.57 | ERROR | |
| r-release-macos-arm64 | 1.0.4 | 4.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.4 | 7.00 | 110.00 | 117.00 | OK | |
| r-release-windows-x86_64 | 1.0.4 | 15.00 | 117.00 | 132.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 7.00 | 214.00 | 221.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.4 | 15.00 | 138.00 | 153.00 | OK |
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘iSubGen-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: write.scaling.factors
> ### Title: Write scaling factors to file
> ### Aliases: write.scaling.factors
>
> ### ** Examples
>
>
> # load the aberration profiles for three data types
> example.molecular.data.dir <- paste0(path.package('iSubGen'),'/exdata/');
> molecular.data <- list();
> for (i in c('cna','snv','methy')) {
+ molecular.data[[i]] <- load.molecular.aberration.data(
+ paste0(example.molecular.data.dir,i,'_profiles.txt'),
+ patients = c(paste0('EP00',1:9), paste0('EP0',10:30))
+ );
+ }
>
> # calculate scaling factors for all three data types
> scaling.factors <- calculate.scaling(molecular.data);
>
> # save the scaling factors to file
> write.scaling.factors(scaling.factors, example.molecular.data.dir);
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/iSubGen/exdata/cna_gene_recenter.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: write.scaling.factors -> write.table -> file
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘ConsensusClusterPlus’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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