Last updated on 2025-09-11 21:50:52 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 678.40 | 503.92 | 1182.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 605.79 | 414.17 | 1019.96 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 1723.45 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 2364.64 | ERROR | |||
| r-devel-windows-x86_64 | 1.2.1 | 708.00 | 522.00 | 1230.00 | OK | |
| r-patched-linux-x86_64 | 1.2.1 | 835.68 | 468.07 | 1303.75 | OK | |
| r-release-linux-x86_64 | 1.2.1 | 862.92 | 446.55 | 1309.47 | OK | |
| r-release-macos-arm64 | 1.2.1 | 277.00 | OK | |||
| r-release-macos-x86_64 | 1.2.1 | 385.00 | OK | |||
| r-release-windows-x86_64 | 1.2.1 | 786.00 | 492.00 | 1278.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.1 | 299.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.2.1 | 383.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.2.1 | 870.00 | 612.00 | 1482.00 | NOTE |
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00094 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.4 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.94 seconds (Warm-up)
Chain 1: 0.323 seconds (Sampling)
Chain 1: 1.263 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000902 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 9.02 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.285 seconds (Warm-up)
Chain 2: 0.806 seconds (Sampling)
Chain 2: 2.091 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.15 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup)
Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup)
Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup)
Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup)
Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup)
Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling)
Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling)
Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling)
Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling)
Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling)
Chain 1: Iteration: 1000 / 1000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.227 seconds (Warm-up)
Chain 1: 0.401 seconds (Sampling)
Chain 1: 0.628 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.002 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.002 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.1e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.001 seconds (Warm-up)
Chain 2: 0 seconds (Sampling)
Chain 2: 0.001 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup)
Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup)
Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup)
Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup)
Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup)
Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling)
Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling)
Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling)
Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling)
Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling)
Chain 1: Iteration: 1000 / 1000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.545 seconds (Warm-up)
Chain 1: 1.203 seconds (Sampling)
Chain 1: 1.748 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.6 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.034 seconds (Warm-up)
Chain 1: 0.011 seconds (Sampling)
Chain 1: 0.045 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.002 seconds (Warm-up)
Chain 2: 0.052 seconds (Sampling)
Chain 2: 0.054 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.46 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
Chain 1: Iteration: 5 / 50 [ 10%] (Warmup)
Chain 1: Iteration: 10 / 50 [ 20%] (Warmup)
Chain 1: Iteration: 15 / 50 [ 30%] (Warmup)
Chain 1: Iteration: 20 / 50 [ 40%] (Warmup)
Chain 1: Iteration: 25 / 50 [ 50%] (Warmup)
Chain 1: Iteration: 26 / 50 [ 52%] (Sampling)
Chain 1: Iteration: 30 / 50 [ 60%] (Sampling)
Chain 1: Iteration: 35 / 50 [ 70%] (Sampling)
Chain 1: Iteration: 40 / 50 [ 80%] (Sampling)
Chain 1: Iteration: 45 / 50 [ 90%] (Sampling)
Chain 1: Iteration: 50 / 50 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.054 seconds (Warm-up)
Chain 1: 0.044 seconds (Sampling)
Chain 1: 0.098 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.38 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
Chain 1: Iteration: 5 / 50 [ 10%] (Warmup)
Chain 1: Iteration: 10 / 50 [ 20%] (Warmup)
Chain 1: Iteration: 15 / 50 [ 30%] (Warmup)
Chain 1: Iteration: 20 / 50 [ 40%] (Warmup)
Chain 1: Iteration: 25 / 50 [ 50%] (Warmup)
Chain 1: Iteration: 26 / 50 [ 52%] (Sampling)
Chain 1: Iteration: 30 / 50 [ 60%] (Sampling)
Chain 1: Iteration: 35 / 50 [ 70%] (Sampling)
Chain 1: Iteration: 40 / 50 [ 80%] (Sampling)
Chain 1: Iteration: 45 / 50 [ 90%] (Sampling)
Chain 1: Iteration: 50 / 50 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.045 seconds (Warm-up)
Chain 1: 0.024 seconds (Sampling)
Chain 1: 0.069 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [35s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.002 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.002 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.002085 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 20.85 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.478 seconds (Warm-up)
Chain 1: 13.769 seconds (Sampling)
Chain 1: 14.247 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002135 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 21.35 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.595 seconds (Warm-up)
Chain 2: 0.743 seconds (Sampling)
Chain 2: 1.338 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup)
Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup)
Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup)
Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup)
Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup)
Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling)
Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling)
Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling)
Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling)
Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling)
Chain 1: Iteration: 1000 / 1000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.776 seconds (Warm-up)
Chain 1: 1.634 seconds (Sampling)
Chain 1: 2.41 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.004097 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 40.97 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.008 seconds (Warm-up)
Chain 1: 0.014 seconds (Sampling)
Chain 1: 0.022 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.006 seconds (Warm-up)
Chain 2: 0.03 seconds (Sampling)
Chain 2: 0.036 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.36 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup)
Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup)
Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup)
Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup)
Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup)
Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling)
Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling)
Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling)
Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling)
Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling)
Chain 1: Iteration: 1000 / 1000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.803 seconds (Warm-up)
Chain 1: 2.8 seconds (Sampling)
Chain 1: 4.603 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.99 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.04 seconds (Warm-up)
Chain 1: 0.013 seconds (Sampling)
Chain 1: 0.053 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 6.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.69 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.007 seconds (Warm-up)
Chain 2: 0.007 seconds (Sampling)
Chain 2: 0.014 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.95 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
Chain 1: Iteration: 5 / 50 [ 10%] (Warmup)
Chain 1: Iteration: 10 / 50 [ 20%] (Warmup)
Chain 1: Iteration: 15 / 50 [ 30%] (Warmup)
Chain 1: Iteration: 20 / 50 [ 40%] (Warmup)
Chain 1: Iteration: 25 / 50 [ 50%] (Warmup)
Chain 1: Iteration: 26 / 50 [ 52%] (Sampling)
Chain 1: Iteration: 30 / 50 [ 60%] (Sampling)
Chain 1: Iteration: 35 / 50 [ 70%] (Sampling)
Chain 1: Iteration: 40 / 50 [ 80%] (Sampling)
Chain 1: Iteration: 45 / 50 [ 90%] (Sampling)
Chain 1: Iteration: 50 / 50 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.193 seconds (Warm-up)
Chain 1: 0.162 seconds (Sampling)
Chain 1: 0.355 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.65 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
Chain 1: Iteration: 5 / 50 [ 10%] (Warmup)
Chain 1: Iteration: 10 / 50 [ 20%] (Warmup)
Chain 1: Iteration: 15 / 50 [ 30%] (Warmup)
Chain 1: Iteration: 20 / 50 [ 40%] (Warmup)
Chain 1: Iteration: 25 / 50 [ 50%] (Warmup)
Chain 1: Iteration: 26 / 50 [ 52%] (Sampling)
Chain 1: Iteration: 30 / 50 [ 60%] (Sampling)
Chain 1: Iteration: 35 / 50 [ 70%] (Sampling)
Chain 1: Iteration: 40 / 50 [ 80%] (Sampling)
Chain 1: Iteration: 45 / 50 [ 90%] (Sampling)
Chain 1: Iteration: 50 / 50 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.167 seconds (Warm-up)
Chain 1: 0.248 seconds (Sampling)
Chain 1: 0.415 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.001 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.002338 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 23.38 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.534 seconds (Warm-up)
Chain 1: 0.147 seconds (Sampling)
Chain 1: 0.681 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002136 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 21.36 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.125 seconds (Warm-up)
Chain 2: 2.486 seconds (Sampling)
Chain 2: 2.611 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.19 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup)
Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup)
Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup)
Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup)
Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup)
Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling)
Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling)
Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling)
Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling)
Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling)
Chain 1: Iteration: 1000 / 1000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.488 seconds (Warm-up)
Chain 1: 1.037 seconds (Sampling)
Chain 1: 1.525 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.007 seconds (Warm-up)
Chain 1: 0.006 seconds (Sampling)
Chain 1: 0.013 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.3e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.23 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.008 seconds (Warm-up)
Chain 2: 0.02 seconds (Sampling)
Chain 2: 0.028 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.31 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 1000 [ 0%] (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%] (Warmup)
Chain 1: Iteration: 200 / 1000 [ 20%] (Warmup)
Chain 1: Iteration: 300 / 1000 [ 30%] (Warmup)
Chain 1: Iteration: 400 / 1000 [ 40%] (Warmup)
Chain 1: Iteration: 500 / 1000 [ 50%] (Warmup)
Chain 1: Iteration: 501 / 1000 [ 50%] (Sampling)
Chain 1: Iteration: 600 / 1000 [ 60%] (Sampling)
Chain 1: Iteration: 700 / 1000 [ 70%] (Sampling)
Chain 1: Iteration: 800 / 1000 [ 80%] (Sampling)
Chain 1: Iteration: 900 / 1000 [ 90%] (Sampling)
Chain 1: Iteration: 1000 / 1000 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.313 seconds (Warm-up)
Chain 1: 2.558 seconds (Sampling)
Chain 1: 3.871 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000106 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.06 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 1: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 1: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 1: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 1: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 1: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 1: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 1: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 1: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 1: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 1: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.014 seconds (Warm-up)
Chain 1: 0.024 seconds (Sampling)
Chain 1: 0.038 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 6.7e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.67 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
Chain 2: Iteration: 1 / 20 [ 5%] (Warmup)
Chain 2: Iteration: 2 / 20 [ 10%] (Warmup)
Chain 2: Iteration: 4 / 20 [ 20%] (Warmup)
Chain 2: Iteration: 6 / 20 [ 30%] (Warmup)
Chain 2: Iteration: 8 / 20 [ 40%] (Warmup)
Chain 2: Iteration: 10 / 20 [ 50%] (Warmup)
Chain 2: Iteration: 11 / 20 [ 55%] (Sampling)
Chain 2: Iteration: 12 / 20 [ 60%] (Sampling)
Chain 2: Iteration: 14 / 20 [ 70%] (Sampling)
Chain 2: Iteration: 16 / 20 [ 80%] (Sampling)
Chain 2: Iteration: 18 / 20 [ 90%] (Sampling)
Chain 2: Iteration: 20 / 20 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.023 seconds (Warm-up)
Chain 2: 0.006 seconds (Sampling)
Chain 2: 0.029 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 7.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.78 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
Chain 1: Iteration: 5 / 50 [ 10%] (Warmup)
Chain 1: Iteration: 10 / 50 [ 20%] (Warmup)
Chain 1: Iteration: 15 / 50 [ 30%] (Warmup)
Chain 1: Iteration: 20 / 50 [ 40%] (Warmup)
Chain 1: Iteration: 25 / 50 [ 50%] (Warmup)
Chain 1: Iteration: 26 / 50 [ 52%] (Sampling)
Chain 1: Iteration: 30 / 50 [ 60%] (Sampling)
Chain 1: Iteration: 35 / 50 [ 70%] (Sampling)
Chain 1: Iteration: 40 / 50 [ 80%] (Sampling)
Chain 1: Iteration: 45 / 50 [ 90%] (Sampling)
Chain 1: Iteration: 50 / 50 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.105 seconds (Warm-up)
Chain 1: 0.098 seconds (Sampling)
Chain 1: 0.203 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.57 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
Chain 1: Iteration: 1 / 50 [ 2%] (Warmup)
Chain 1: Iteration: 5 / 50 [ 10%] (Warmup)
Chain 1: Iteration: 10 / 50 [ 20%] (Warmup)
Chain 1: Iteration: 15 / 50 [ 30%] (Warmup)
Chain 1: Iteration: 20 / 50 [ 40%] (Warmup)
Chain 1: Iteration: 25 / 50 [ 50%] (Warmup)
Chain 1: Iteration: 26 / 50 [ 52%] (Sampling)
Chain 1: Iteration: 30 / 50 [ 60%] (Sampling)
Chain 1: Iteration: 35 / 50 [ 70%] (Sampling)
Chain 1: Iteration: 40 / 50 [ 80%] (Sampling)
Chain 1: Iteration: 45 / 50 [ 90%] (Sampling)
Chain 1: Iteration: 50 / 50 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.183 seconds (Warm-up)
Chain 1: 0.092 seconds (Sampling)
Chain 1: 0.275 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 113.0Mb
sub-directories of 1Mb or more:
article 3.0Mb
doc 1.1Mb
libs 108.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.