CRAN Package Check Results for Maintainer ‘Bryan A. Hanson <hanson at depauw.edu>’

Last updated on 2024-05-02 04:01:03 CEST.

Package	ERROR	OK
ChemoSpec	2	11
ChemoSpec2D		12
ChemoSpecUtils		13
exCon		12
FuncMap		12
HiveR		12
LearnPCA		13
LindenmayeR		12
readJDX		12
roxut		12
SpecHelpers		12

Package ChemoSpec

Current CRAN status: ERROR: 2, OK: 11

Version: 6.1.10
Check: examples
Result: ERROR Running examples in ‘ChemoSpec-Ex.R’ failed The error most likely occurred in: > ### Name: clupaSpectra > ### Title: Hierarchical Cluster-Based Peak Alignment on a Spectra Object > ### Aliases: clupaSpectra > ### Keywords: utilities > > ### ** Examples > > # You need to install package speaq for this example > # This example assumes the graphics output is set to ggplot2 (see ?GraphicsOptions). > if (requireNamespace("speaq", quietly = TRUE)) { + library("ggplot2") + data(alignMUD) + + p1 <- plotSpectra(alignMUD, which = 1:20, lab.pos = 4.5, offset = 0.1, + yrange = c(0, 5000), amp = 500) + p1 <- p1 + ggtitle("Misaligned NMR Spectra") + + coord_cartesian(xlim = c(1.5, 1.8), ylim = c(0, 1900)) + p1 + + aMUD <- clupaSpectra(alignMUD) + + p2 <- plotSpectra(aMUD, which = 1:20, lab.pos = 4.5, offset = 0.1, + yrange = c(0, 5000), amp = 500) + p2 <- p2 + ggtitle("Aligned NMR Spectra") + + coord_cartesian(xlim = c(1.5, 1.8), ylim = c(0, 1900)) + p2 + } Coordinate system already present. Adding new coordinate system, which will replace the existing one. Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 1 has 0 peaks Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 2 has 0 peaks Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 3 has 0 peaks Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 4 has 0 peaks Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 5 has 0 peaks Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 6 has 0 peaks Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 7 has 0 peaks Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 8 has 0 peaks Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 9 has 0 peaks Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 10 has 0 peaks Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 11 has 0 peaks Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 12 has 0 peaks Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 13 has 0 peaks Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 14 has 0 peaks Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 15 has 0 peaks Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 16 has 0 peaks Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 17 has 0 peaks Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 18 has 0 peaks Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 19 has 0 peaks Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols Spectrum 20 has 0 peaks -------------------------------- CluPA will run with maxShift= 100 If you want CluPA automatically detect the optimal maxShift, let try with dohCluster(...,maxShift=NULL,..) -------------------------------- aligning spectrum 2Warning in min(peakList) : no non-missing arguments to min; returning Inf Warning in max(peakList) : no non-missing arguments to max; returning -Inf Error in startP:(minpeakList - 1) : result would be too long a vector Calls: clupaSpectra -> <Anonymous> -> .withMaxShift -> hClustAlign Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package ChemoSpec2D

Current CRAN status: OK: 12

Package ChemoSpecUtils

Current CRAN status: OK: 13

Package exCon

Current CRAN status: OK: 12

Package FuncMap

Current CRAN status: OK: 12

Package HiveR

Current CRAN status: OK: 12

Package LearnPCA

Current CRAN status: OK: 13

Package LindenmayeR

Current CRAN status: OK: 12

Package readJDX

Current CRAN status: OK: 12

Package roxut

Current CRAN status: OK: 12

Package SpecHelpers

Current CRAN status: OK: 12