Last updated on 2024-05-02 01:56:54 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 6.1.10 | 15.09 | 162.12 | 177.21 | OK | |
r-devel-linux-x86_64-debian-gcc | 6.1.10 | 9.47 | 119.49 | 128.96 | OK | |
r-devel-linux-x86_64-fedora-clang | 6.1.10 | 221.46 | OK | |||
r-devel-linux-x86_64-fedora-gcc | 6.1.10 | 229.29 | OK | |||
r-devel-windows-x86_64 | 6.1.10 | 11.00 | 236.00 | 247.00 | OK | |
r-patched-linux-x86_64 | 6.1.10 | 15.73 | 152.28 | 168.01 | OK | |
r-release-linux-x86_64 | 6.1.10 | 7.80 | 151.98 | 159.78 | OK | |
r-release-macos-arm64 | 6.1.10 | 63.00 | OK | |||
r-release-macos-x86_64 | 6.1.10 | 194.00 | OK | |||
r-release-windows-x86_64 | 6.1.10 | 12.00 | 238.00 | 250.00 | OK | |
r-oldrel-macos-arm64 | 6.1.10 | 75.00 | ERROR | |||
r-oldrel-macos-x86_64 | 6.1.10 | 137.00 | ERROR | |||
r-oldrel-windows-x86_64 | 6.1.10 | 15.00 | 235.00 | 250.00 | OK |
Version: 6.1.10
Check: examples
Result: ERROR
Running examples in ‘ChemoSpec-Ex.R’ failed
The error most likely occurred in:
> ### Name: clupaSpectra
> ### Title: Hierarchical Cluster-Based Peak Alignment on a Spectra Object
> ### Aliases: clupaSpectra
> ### Keywords: utilities
>
> ### ** Examples
>
> # You need to install package speaq for this example
> # This example assumes the graphics output is set to ggplot2 (see ?GraphicsOptions).
> if (requireNamespace("speaq", quietly = TRUE)) {
+ library("ggplot2")
+ data(alignMUD)
+
+ p1 <- plotSpectra(alignMUD, which = 1:20, lab.pos = 4.5, offset = 0.1,
+ yrange = c(0, 5000), amp = 500)
+ p1 <- p1 + ggtitle("Misaligned NMR Spectra") +
+ coord_cartesian(xlim = c(1.5, 1.8), ylim = c(0, 1900))
+ p1
+
+ aMUD <- clupaSpectra(alignMUD)
+
+ p2 <- plotSpectra(aMUD, which = 1:20, lab.pos = 4.5, offset = 0.1,
+ yrange = c(0, 5000), amp = 500)
+ p2 <- p2 + ggtitle("Aligned NMR Spectra") +
+ coord_cartesian(xlim = c(1.5, 1.8), ylim = c(0, 1900))
+ p2
+ }
Coordinate system already present. Adding new coordinate system, which will
replace the existing one.
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 1 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 1 has 0 peaks
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 2 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 2 has 0 peaks
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 3 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 3 has 0 peaks
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 4 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 4 has 0 peaks
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 5 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 5 has 0 peaks
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 6 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 6 has 0 peaks
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 7 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 7 has 0 peaks
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 8 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 8 has 0 peaks
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 9 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 9 has 0 peaks
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 10 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 10 has 0 peaks
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 11 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 11 has 0 peaks
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 12 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 12 has 0 peaks
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 13 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 13 has 0 peaks
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 14 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 14 has 0 peaks
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 15 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 15 has 0 peaks
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 16 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 16 has 0 peaks
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 17 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 17 has 0 peaks
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 18 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 18 has 0 peaks
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 19 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 19 has 0 peaks
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Wannings for spectrum 20 from function peakDetectionCWT() of MassSpecWavelet package: DLL requires the use of native symbols
Spectrum 20 has 0 peaks
--------------------------------
CluPA will run with maxShift= 100
If you want CluPA automatically detect the optimal maxShift,
let try with dohCluster(...,maxShift=NULL,..)
--------------------------------
aligning spectrum 2Warning in min(peakList) :
no non-missing arguments to min; returning Inf
Warning in max(peakList) :
no non-missing arguments to max; returning -Inf
Error in startP:(minpeakList - 1) : result would be too long a vector
Calls: clupaSpectra -> <Anonymous> -> .withMaxShift -> hClustAlign
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.