CRAN Package Check Results for Maintainer ‘Hajk-Georg Drost <hajk-georg.drost at tuebingen.mpg.de>’

Last updated on 2026-04-17 11:54:23 CEST.

Package	ERROR	NOTE	OK
biomartr			14
myTAI	1	3	10
philentropy			14

Package biomartr

Current CRAN status: OK: 14

Package myTAI

Current CRAN status: ERROR: 1, NOTE: 3, OK: 10

Version: 2.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'myTAI.Rmd' using rmarkdown --- finished re-building 'myTAI.Rmd' --- re-building 'other-strata.Rmd' using rmarkdown --- finished re-building 'other-strata.Rmd' --- re-building 'phylo-expression-object.Rmd' using rmarkdown Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building 'phylo-expression-object.Rmd' --- re-building 'phylostratigraphy.Rmd' using rmarkdown --- finished re-building 'phylostratigraphy.Rmd' --- re-building 'tai-breaker.Rmd' using rmarkdown --- finished re-building 'tai-breaker.Rmd' --- re-building 'tai-gallery.Rmd' using rmarkdown --- finished re-building 'tai-gallery.Rmd' --- re-building 'tai-stats.Rmd' using rmarkdown --- finished re-building 'tai-stats.Rmd' --- re-building 'tai-transform.Rmd' using rmarkdown --- finished re-building 'tai-transform.Rmd' --- re-building 'taxonomy.Rmd' using rmarkdown Quitting from taxonomy.Rmd:307-311 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! Gateway Timeout (HTTP 504) --- Backtrace: ▆ 1. └─global taxonomy(organism = "Arabidopsis", db = "itis", output = "children") 2. ├─base::as.data.frame(taxize::children(organism, db = db)[[1]]) 3. ├─taxize::children(organism, db = db) 4. └─taxize:::children.default(organism, db = db) 5. ├─stats::setNames(children(id, ...), sci_id) 6. ├─taxize::children(id, ...) 7. └─taxize:::children.tsn(id, ...) 8. └─base::lapply(sci_id, fun) 9. └─taxize (local) FUN(X[[i]], ...) 10. └─ritis::hierarchy_down(y, ...) 11. └─ritis:::itis_GET(...) 12. └─tt$raise_for_status() ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'taxonomy.Rmd' failed with diagnostics: Gateway Timeout (HTTP 504) --- failed re-building 'taxonomy.Rmd' SUMMARY: processing the following file failed: 'taxonomy.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Version: 2.3.5
Check: installed package size
Result: NOTE installed size is 11.0Mb sub-directories of 1Mb or more: doc 6.1Mb libs 3.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package philentropy

Current CRAN status: OK: 14