CRAN Package Check Results for Maintainer ‘Hein Putter <H.Putter at lumc.nl>’

Last updated on 2025-12-28 03:52:04 CET.

Package	ERROR	NOTE	OK
dynpred		13
icpack			13
mstate	1		12

Package dynpred

Current CRAN status: NOTE: 13

Version: 0.1.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Hein Putter <H.Putter@lumc.nl>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Hein", family = "Putter", role = c("aut", "cre"), email = "h.putter@lumc.nl") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: Rd files
Result: NOTE checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:26: Escaped LaTeX specials: \& checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:33: Escaped LaTeX specials: \& checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:37: Escaped LaTeX specials: \& checkRd: (-1) WBC-follow-up-data.Rd:13: Escaped LaTeX specials: \& checkRd: (-1) WBC-follow-up-data.Rd:14: Escaped LaTeX specials: \& checkRd: (-1) WBC-follow-up-data.Rd:26: Escaped LaTeX specials: \& checkRd: (-1) WBC-follow-up-data.Rd:31: Escaped LaTeX specials: \& checkRd: (-1) WBC-follow-up-data.Rd:41: Escaped LaTeX specials: \& checkRd: (-1) WBC-measurements-data.Rd:13: Escaped LaTeX specials: \& checkRd: (-1) WBC-measurements-data.Rd:14: Escaped LaTeX specials: \& checkRd: (-1) WBC-measurements-data.Rd:25: Escaped LaTeX specials: \& checkRd: (-1) WBC-measurements-data.Rd:30: Escaped LaTeX specials: \& checkRd: (-1) WBC-measurements-data.Rd:40: Escaped LaTeX specials: \& Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.1.2
Check: compiled code
Result: NOTE File ‘dynpred/libs/dynpred.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package icpack

Current CRAN status: OK: 13

Package mstate

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.3
Check: examples
Result: ERROR Running examples in 'mstate-Ex.R' failed The error most likely occurred in: > ### Name: plot.Cuminc > ### Title: Plot method for Cuminc objects > ### Aliases: plot.Cuminc > > ### ** Examples > > library(ggplot2) > > data("aidssi") > head(aidssi) patnr time status cause ccr5 1 1 9.106 1 AIDS WW 2 2 11.039 0 event-free WM 3 3 2.234 1 AIDS WW 4 4 9.878 2 SI WM 5 5 3.819 1 AIDS WW 6 6 6.801 1 AIDS WW > si <- aidssi > > # No grouping > cum_incid <- Cuminc( + time = "time", + status = "status", + data = si + ) > > plot( + x = cum_incid, + use.ggplot = TRUE, + conf.type = "none", + lty = 1:2, + conf.int = 0.95 + ) Error in `[.data.table`(df_long, , `:=`(CI_low = make_prob_confint(prob, : attempt access index 6/6 in VECTOR_ELT Calls: plot ... ggplot.Cuminc -> prep_Cuminc_df -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'visuals_demo.Rmd' using rmarkdown Quitting from visuals_demo.Rmd:202-205 [plot_pt_filled2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 8/8 in VECTOR_ELT --- Backtrace: ▆ 1. ├─base::plot(pt.WW, use.ggplot = TRUE) 2. └─mstate:::plot.probtrans(pt.WW, use.ggplot = TRUE) 3. └─mstate:::ggplot.probtrans(...) 4. └─mstate:::prep_probtrans_df(...) 5. ├─df_long[, `:=`(cum_probs, cumsum(prob)), by = time] 6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'visuals_demo.Rmd' failed with diagnostics: attempt access index 8/8 in VECTOR_ELT --- failed re-building 'visuals_demo.Rmd' --- re-building 'Tutorial.Rnw' using Sweave Loading required package: survival --- finished re-building 'Tutorial.Rnw' SUMMARY: processing the following file failed: 'visuals_demo.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64