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Last updated on 2026-04-30 18:53:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.5.0 | 17.25 | 396.12 | 413.37 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.5.0 | 12.07 | 261.59 | 273.66 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.5.0 | 34.00 | 622.34 | 656.34 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.5.0 | 35.00 | 673.58 | 708.58 | OK | |
| r-devel-windows-x86_64 | 2.5.0 | 25.00 | 363.00 | 388.00 | OK | |
| r-patched-linux-x86_64 | 2.5.0 | 20.86 | 363.88 | 384.74 | OK | |
| r-release-linux-x86_64 | 2.5.0 | 17.69 | 370.05 | 387.74 | OK | |
| r-release-macos-arm64 | 2.5.0 | 4.00 | 77.00 | 81.00 | OK | |
| r-release-macos-x86_64 | 2.5.0 | 12.00 | 217.00 | 229.00 | ERROR | |
| r-release-windows-x86_64 | 2.5.0 | 23.00 | 356.00 | 379.00 | OK | |
| r-oldrel-macos-arm64 | 2.5.0 | 4.00 | 68.00 | 72.00 | OK | |
| r-oldrel-macos-x86_64 | 2.5.0 | 13.00 | 234.00 | 247.00 | OK | |
| r-oldrel-windows-x86_64 | 2.5.0 | 28.00 | 490.00 | 518.00 | OK |
Version: 2.5.0
Check: examples
Result: ERROR
Running examples in ‘gtsummary-Ex.R’ failed
The error most likely occurred in:
> ### Name: bold_p
> ### Title: Bold significant p-values
> ### Aliases: bold_p
>
> ### ** Examples
>
> # Example 1 ----------------------------------
> trial |>
+ tbl_summary(by = trt, include = c(response, marker, trt), missing = "no") |>
+ add_p() |>
+ bold_p(t = 0.1)
<div id="ydgabwknrs" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
<style>#ydgabwknrs table {
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-webkit-font-smoothing: antialiased;
-moz-osx-font-smoothing: grayscale;
}
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border-style: none;
}
#ydgabwknrs p {
margin: 0;
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}
#ydgabwknrs .gt_table {
display: table;
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line-height: normal;
margin-left: auto;
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color: #333333;
font-size: 16px;
font-weight: normal;
font-style: normal;
background-color: #FFFFFF;
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border-top-width: 2px;
border-top-color: #A8A8A8;
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border-right-width: 2px;
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#ydgabwknrs .gt_caption {
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#ydgabwknrs .gt_title {
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color: #333333;
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border-top-color: #FFFFFF;
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}
#ydgabwknrs .gt_heading {
background-color: #FFFFFF;
text-align: center;
border-bottom-color: #FFFFFF;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
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#ydgabwknrs .gt_bottom_border {
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border-bottom-color: #D3D3D3;
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#ydgabwknrs .gt_col_headings {
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border-bottom-color: #D3D3D3;
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border-left-color: #D3D3D3;
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border-right-color: #D3D3D3;
}
#ydgabwknrs .gt_col_heading {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: normal;
text-transform: inherit;
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border-left-width: 1px;
border-left-color: #D3D3D3;
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border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: bottom;
padding-top: 5px;
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overflow-x: hidden;
}
#ydgabwknrs .gt_column_spanner_outer {
color: #333333;
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font-size: 100%;
font-weight: normal;
text-transform: inherit;
padding-top: 0;
padding-bottom: 0;
padding-left: 4px;
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}
#ydgabwknrs .gt_column_spanner_outer:first-child {
padding-left: 0;
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#ydgabwknrs .gt_column_spanner_outer:last-child {
padding-right: 0;
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#ydgabwknrs .gt_column_spanner {
border-bottom-style: solid;
border-bottom-width: 2px;
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vertical-align: bottom;
padding-top: 5px;
padding-bottom: 5px;
overflow-x: hidden;
display: inline-block;
width: 100%;
}
#ydgabwknrs .gt_spanner_row {
border-bottom-style: hidden;
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#ydgabwknrs .gt_group_heading {
padding-top: 8px;
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color: #333333;
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font-size: 100%;
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border-top-color: #D3D3D3;
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border-right-color: #D3D3D3;
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#ydgabwknrs .gt_empty_group_heading {
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font-size: 100%;
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border-top-color: #D3D3D3;
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border-bottom-color: #D3D3D3;
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}
#ydgabwknrs .gt_from_md > :first-child {
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#ydgabwknrs .gt_from_md > :last-child {
margin-bottom: 0;
}
#ydgabwknrs .gt_row {
padding-top: 8px;
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margin: 10px;
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border-left-color: #D3D3D3;
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border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
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#ydgabwknrs .gt_stub {
color: #333333;
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border-right-color: #D3D3D3;
padding-left: 5px;
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}
#ydgabwknrs .gt_stub_row_group {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: solid;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
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vertical-align: top;
}
#ydgabwknrs .gt_row_group_first td {
border-top-width: 2px;
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#ydgabwknrs .gt_row_group_first th {
border-top-width: 2px;
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#ydgabwknrs .gt_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
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#ydgabwknrs .gt_first_summary_row {
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}
#ydgabwknrs .gt_first_summary_row.thick {
border-top-width: 2px;
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#ydgabwknrs .gt_last_summary_row {
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border-bottom-style: solid;
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#ydgabwknrs .gt_grand_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
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padding-left: 5px;
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}
#ydgabwknrs .gt_first_grand_summary_row {
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padding-bottom: 8px;
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padding-right: 5px;
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border-top-color: #D3D3D3;
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border-bottom-style: double;
border-bottom-width: 6px;
border-bottom-color: #D3D3D3;
}
#ydgabwknrs .gt_striped {
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border-top-color: #D3D3D3;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#ydgabwknrs .gt_footnotes {
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border-bottom-style: none;
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border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
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border-right-width: 2px;
border-right-color: #D3D3D3;
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#ydgabwknrs .gt_footnote {
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padding-top: 4px;
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padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_sourcenotes {
color: #333333;
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border-bottom-width: 2px;
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border-left-style: none;
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border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
}
#ydgabwknrs .gt_sourcenote {
font-size: 90%;
padding-top: 4px;
padding-bottom: 4px;
padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_left {
text-align: left;
}
#ydgabwknrs .gt_center {
text-align: center;
}
#ydgabwknrs .gt_right {
text-align: right;
font-variant-numeric: tabular-nums;
}
#ydgabwknrs .gt_font_normal {
font-weight: normal;
}
#ydgabwknrs .gt_font_bold {
font-weight: bold;
}
#ydgabwknrs .gt_font_italic {
font-style: italic;
}
#ydgabwknrs .gt_super {
font-size: 65%;
}
#ydgabwknrs .gt_footnote_marks {
font-size: 75%;
vertical-align: 0.4em;
position: initial;
}
#ydgabwknrs .gt_asterisk {
font-size: 100%;
vertical-align: 0;
}
#ydgabwknrs .gt_indent_1 {
text-indent: 5px;
}
#ydgabwknrs .gt_indent_2 {
text-indent: 10px;
}
#ydgabwknrs .gt_indent_3 {
text-indent: 15px;
}
#ydgabwknrs .gt_indent_4 {
text-indent: 20px;
}
#ydgabwknrs .gt_indent_5 {
text-indent: 25px;
}
#ydgabwknrs .katex-display {
display: inline-flex !important;
margin-bottom: 0.75em !important;
}
#ydgabwknrs div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
height: 0px !important;
}
</style>
<table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead>
<tr class="gt_col_headings">
<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="label"><span class='gt_from_md'><strong>Characteristic</strong></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_1"><span class='gt_from_md'><strong>Drug A</strong><br />
N = 98</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_2"><span class='gt_from_md'><strong>Drug B</strong><br />
N = 102</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="p.value"><span class='gt_from_md'><strong>p-value</strong></span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>2</sup></span></th>
</tr>
</thead>
<tbody class="gt_table_body">
<tr><td headers="label" class="gt_row gt_left">Tumor Response</td>
<td headers="stat_1" class="gt_row gt_center">28 (29%)</td>
<td headers="stat_2" class="gt_row gt_center">33 (34%)</td>
<td headers="p.value" class="gt_row gt_center">0.5</td></tr>
<tr><td headers="label" class="gt_row gt_left">Marker Level (ng/mL)</td>
<td headers="stat_1" class="gt_row gt_center">0.84 (0.23, 1.60)</td>
<td headers="stat_2" class="gt_row gt_center">0.52 (0.18, 1.21)</td>
<td headers="p.value" class="gt_row gt_center" style="font-weight: bold;">0.085</td></tr>
</tbody>
<tfoot>
<tr class="gt_footnotes">
<td class="gt_footnote" colspan="4"><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span> <span class='gt_from_md'>n (%); Median (Q1, Q3)</span></td>
</tr>
<tr class="gt_footnotes">
<td class="gt_footnote" colspan="4"><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>2</sup></span> <span class='gt_from_md'>Pearson’s Chi-squared test; Wilcoxon rank sum test</span></td>
</tr>
</tfoot>
</table>
</div>
>
> # Example 2 ----------------------------------
> glm(response ~ trt + grade, trial, family = binomial(link = "logit")) |>
+ tbl_regression(exponentiate = TRUE) |>
+ bold_p(t = 0.65)
Error in bold_p(tbl_regression(glm(response ~ trt + grade, trial, family = binomial(link = "logit")), :
The package "broom.helpers" (>= 1.20.0) is required.
Calls: bold_p ... tbl_regression -> check_pkg_installed -> <Anonymous>
Execution halted
Flavor: r-release-macos-x86_64
Version: 2.5.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘gtsummary_definition.Rmd’ using rmarkdown
Quitting from gtsummary_definition.Rmd:30-41 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `bold_p()`:
! The package "broom.helpers" (>= 1.20.0) is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gtsummary_definition.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.20.0) is required.
--- failed re-building ‘gtsummary_definition.Rmd’
SUMMARY: processing the following file failed:
‘gtsummary_definition.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
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