CRAN Package Check Results for Package glmMisrep

Last updated on 2025-04-03 02:53:00 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 8.30 53.97 62.27 OK
r-devel-linux-x86_64-debian-gcc 0.1.1 5.98 38.22 44.20 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.1 102.75 OK
r-devel-linux-x86_64-fedora-gcc 0.1.1 98.24 OK
r-devel-macos-arm64 0.1.1 30.00 OK
r-devel-macos-x86_64 0.1.1 56.00 OK
r-devel-windows-x86_64 0.1.1 9.00 82.00 91.00 OK
r-patched-linux-x86_64 0.1.1 7.80 52.10 59.90 OK
r-release-linux-x86_64 0.1.1 8.77 51.85 60.62 OK
r-release-macos-arm64 0.1.1 29.00 OK
r-release-macos-x86_64 0.1.1 47.00 OK
r-release-windows-x86_64 0.1.1 9.00 83.00 92.00 OK
r-oldrel-macos-arm64 0.1.1 OK
r-oldrel-macos-x86_64 0.1.1 76.00 OK
r-oldrel-windows-x86_64 0.1.1 10.00 79.00 89.00 OK

Check Details

Version: 0.1.1
Check: tests
Result: ERROR Running ‘LN-testing.R’ [1s/1s] Running ‘NB-testing.R’ [1s/2s] Running ‘Norm-testing.R’ [1s/1s] Running ‘Pois-testing.R’ [2s/2s] Running ‘gamma-testing.R’ [2s/2s] Running the tests in ‘tests/Pois-testing.R’ failed. Complete output: > require(glmMisrep) Loading required package: glmMisrep > > data <- data.frame( Y = c(0, 0, 2, 0, 3, 0, 36, 0, 2, 1, 0, 2, 6, 9, 0, 0, 0, 0, 7, 1, 1, 2, 50, 4, 0, 0, 0, 1, + 0, 0, 0, 3, 0, 0, 1, 0, 1, 3, 176, 0, 0, 0, 0, 0, 2, 286, 0, 0, 0, 18), + X1 = c(0, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 1, 0, 1, 0, 0, 1, 1, 0, 0, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 1, 0, 1, 1, 1, 0, 0, 0, 1), + X2 = c(1.71870212, -0.55840901, 1.22589915, 0.53000107, 0.62571132, 0.02873955, 0.30989954, 1.35514993, 0.15587503, + 0.27987513, 0.48892178, 0.35218767, 0.52382778, 1.58126751, -0.07855081, -0.57128802, -0.92500953, -2.48543328, + 0.03810910, 0.39929906, -0.54854763, -0.10505694, 0.45120734, 0.32295222, -0.68595918, -0.66892486, 1.72253431, + -0.28425276, -0.67719912, -0.39644260, -0.16843500, 0.90540261, -1.38574804, 0.14456841, 0.44142810, -1.89442541, + -0.65961894, 2.13148776, 1.72410805, -1.60207312, -1.09525034, -1.31327168, -0.43378445, 1.33644956, 1.28938359, + 0.90232362, -0.94112768, -0.61851917, 0.37033085, -0.47019541), + X3 = c(0.6882029, 0.9934165, 0.9173388, 0.9406660, 0.5130041, 0.8590187, 0.4468488, 0.4186652, 0.5098278, 0.3339481, 0.6922477, + 0.6793977, 0.4983724, 0.6079911, 0.7763041, 0.8529067, 0.8287771, 0.9125900, 0.4802076, 0.8981448, 0.3570093, 0.9209584, + 0.4353817, 0.9426418, 0.9550002, 0.4869851, 0.9560156, 0.8247537, 0.1939687, 0.6103839, 0.7721900, 0.5980044, 0.8683831, + 0.7004518, 0.8577210, 0.3576712, 0.9540088, 0.9880046, 0.4304899, 0.7416618, 0.6656063, 0.8920356, 0.6097593, 0.8008748, + 0.8110432, 0.5967969, 0.6983106, 0.9471680, 0.9929186, 0.9059200), + Sex = c("Female", "Male", "Male", "Female", "Male", "Female", "Male", "Male", "Female", "Female", "Male", "Male", + "Male", "Female", "Male", "Male", "Female", "Female", "Male", "Female", "Female", "Male", "Female", "Male", + "Male", "Male", "Male", "Female", "Female", "Female", "Male", "Male", "Male", "Male", "Female", "Female", + "Female", "Female", "Male", "Male", "Male", "Male", "Male", "Male", "Female", "Male", "Male", "Female", + "Female", "Male"), + Race = c("Black", "White", "White", "White", "White", "White", "Black", "Black", "Black", "Black", "Black", "Black", "White", "Other", + "Black", "White", "Black", "White", "Other", "Black", "White", "Other", "Other", "White", "White", "White", "Black", "Other", + "White", "Other", "White", "Black", "Other", "Black", "Other", "Other", "Other", "Black", "Other", "Black", "White", "Other", + "Black", "White", "Black", "Other", "White", "Black", "Black", "Other"), + V_star = c(0, 0, 0, 1, 0, 0, 1, 0, 1, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0)) > > data$Race <- as.factor(data$Race) > data$Sex <- as.factor(data$Sex) > > t1 <- tryCatch(poisRegMisrepEM(formula = y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6,0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # The response above is inappropriately specified (y, not Y) > stopifnot( + t1$message == "object 'y' not found" + ) > > > t2 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_Star", + data = data, + lambda = c(0.6,0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # Argument to 'v_star' is misspelled > stopifnot( + t2$message == "variable V_Star not present in dataframe" + ) > > > data$V_star <- ifelse(data$V_star == 1, yes = "yes", no = "no") > > t3 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6,0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > > # v* variable is type character (yes and no) > stopifnot( + t3$message == "v_star variable must be of class 'factor' or 'numeric'" + ) > > data$V_star <- ifelse(data$V_star == "yes", yes = 1, no = 0) > > > data$V_star[10] <- -1 > > > t4 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6,0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # v* variable must be binary > stopifnot( + t4$message == "v_star variable must contain two unique values" + ) > > data$V_star[10] <- 0 > > > data$V_star <- ifelse(data$V_star == 1, yes = 1, no = 2) > > t5 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6,0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # v* must be binary, but more specifically 0/1; > stopifnot( + t5$message == "v_star variable must be coded with ones and zeroes" + ) > > > > data$V_star <- ifelse(data$V_star == 1, yes = 1, no = 0) > > t6 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.49, 0.52), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # Inappropriately specified lambda argument > stopifnot( + t6$message == "Lambda vector must sum to one" + ) > > > t7 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(1/3, 1/3, 1/3), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # Inappropriately specified lambda argument > stopifnot( + t7$message == "Lambda vector must contain two elements" + ) > > > > data$X4 <- data$X2*0.3 > > t8 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + X4 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6, 0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > # Linearly dependent covariates/degenerate design matrix > stopifnot( + t8$message == "Linear dependencies exist in the covariates" + ) > > > t9 <- tryCatch(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race, + v_star = "V_star", + data = data, + lambda = c(0.6, 0.4), + epsilon = 1e-08, + maxit = 10000, + maxrestarts = 20), + error = function(x) x ) > > #V_star variable absent from formula > stopifnot( + t9$message == "v_star variable must be specified in 'formula'" + ) > > > > # EM algorithm should fail to converge within the specified number of attempts > t10 <- tryCatch( + capture.output(poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6, 0.4), + epsilon = 1e-08, + maxit = 2, + maxrestarts = 1)), + error = function(x) x + ) > > stopifnot( + t10$message == "NOT CONVERGENT! Failed to converge after 1 attempts" + ) > > > # On the first attempt, fails to converge, and restarts with new mixing props. > # Succeeds on the second attempt. > msg <- capture.output( + t11 <- poisRegMisrepEM(formula = Y ~ X1 + X2 + X3 + Sex + Race + V_star, + v_star = "V_star", + data = data, + lambda = c(0.6, 0.4), + epsilon = 1e-08, + maxit = 16, + maxrestarts = 4, verb = TRUE), + type = "message" + ) Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.