CRAN Package Check Results for Package glioblastomaEHRsData

Last updated on 2025-12-28 07:49:55 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.0	12.03	140.62	152.65	OK
r-devel-linux-x86_64-debian-gcc	0.1.0	9.11	102.52	111.63	OK
r-devel-linux-x86_64-fedora-clang	0.1.0	20.00	211.23	231.23	OK
r-devel-linux-x86_64-fedora-gcc	0.1.0	22.00	227.59	249.59	OK
r-devel-windows-x86_64	0.1.0	13.00	131.00	144.00	ERROR
r-patched-linux-x86_64	0.1.0	10.04	121.93	131.97	OK
r-release-linux-x86_64	0.1.0	10.85	121.08	131.93	OK
r-release-macos-arm64	0.1.0				OK
r-release-macos-x86_64	0.1.0	8.00	150.00	158.00	OK
r-release-windows-x86_64	0.1.0	15.00	129.00	144.00	OK
r-oldrel-macos-arm64	0.1.0				OK
r-oldrel-macos-x86_64	0.1.0	8.00	125.00	133.00	OK
r-oldrel-windows-x86_64	0.1.0	16.00	167.00	183.00	OK

Check Details

Version: 0.1.0
Check: tests
Result: ERROR Running 'testthat.R' [25s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(glioblastomaEHRsData) > > test_check("glioblastomaEHRsData") Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Error : Can't find test_paths Saving _problems/test-descriptiveTableMunich2019dataset-12.R processing file: filefd6c2727502d.Rmd output file: filefd6c2727502d.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS filefd6c2727502d.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandocfd6c200ce1b.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_12_24_01_50_00_27005\Rtmps3IyEd\rmarkdown-strfd6c90844e3.html" Output created: D:\temp\2025_12_24_01_50_00_27005\Rtmps3IyEd\tables\munich_test_table.html Saving _problems/test-descriptiveTableTainan2020dataset-12.R processing file: filefd6c4cb01409.Rmd output file: filefd6c4cb01409.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS filefd6c4cb01409.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandocfd6c63501c4f.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_12_24_01_50_00_27005\Rtmps3IyEd\rmarkdown-strfd6c72f02797.html" Output created: D:\temp\2025_12_24_01_50_00_27005\Rtmps3IyEd\tables\tainan_test_table.html Saving _problems/test-descriptiveTableUtrecht2019dataset-12.R processing file: filefd6c2e6c7edc.Rmd output file: filefd6c2e6c7edc.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS filefd6c2e6c7edc.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandocfd6c787063b5.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_12_24_01_50_00_27005\Rtmps3IyEd\rmarkdown-strfd6c5cd96824.html" Output created: D:\temp\2025_12_24_01_50_00_27005\Rtmps3IyEd\tables\utrecht_test_table.html Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image [ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • pandoc not available (3): 'test-descriptiveTableMunich2019dataset.R:27:3', 'test-descriptiveTableTainan2020dataset.R:27:3', 'test-descriptiveTableUtrecht2019dataset.R:27:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-descriptiveTableMunich2019dataset.R:12:3'): descriptiveTableMunich2019dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableMunich2019dataset(savePath = path) at test-descriptiveTableMunich2019dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) ── Error ('test-descriptiveTableTainan2020dataset.R:12:3'): descriptiveTableTainan2020dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableTainan2020dataset(savePath = path) at test-descriptiveTableTainan2020dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) ── Error ('test-descriptiveTableUtrecht2019dataset.R:12:3'): descriptiveTableUtrecht2019dataset(savePath = 'tables/') return a table1 object and save a png file ── Error in ``[.data.table`(grid_data, , `:=`("cell_width", safe_stat(.SD$col_width, FUN = sum, NA_value = NA_real_)), by = "rowspan_group")`: attempt access index 14/14 in VECTOR_ELT Backtrace: ▆ 1. └─glioblastomaEHRsData::descriptiveTableUtrecht2019dataset(savePath = path) at test-descriptiveTableUtrecht2019dataset.R:12:3 2. └─glioblastomaEHRsData:::saveTable(...) 3. └─flextable::save_as_image(t1flex(t1), savePath) 4. └─flextable::gen_grob(x, fit = "fixed", just = "center") 5. └─flextable:::get_grid_data(x, autowidths, wrapping) 6. ├─...[] 7. └─data.table:::`[.data.table`(...) [ FAIL 3 | WARN 1 | SKIP 3 | PASS 102 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64