CRAN Package Check Results for Package ggmugs

Last updated on 2026-04-13 11:57:56 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.6.0	1.85	39.21	41.06	NOTE
r-devel-linux-x86_64-debian-gcc	0.6.0	1.47	32.60	34.07	NOTE
r-devel-linux-x86_64-fedora-clang	0.6.0			53.60	NOTE
r-devel-linux-x86_64-fedora-gcc	0.6.0			54.30	NOTE
r-devel-macos-arm64	0.6.0	1.00	24.00	25.00	NOTE
r-devel-windows-x86_64	0.6.0	4.00	59.00	63.00	NOTE
r-patched-linux-x86_64	0.6.0	1.82	27.11	28.93	ERROR
r-release-linux-x86_64	0.6.0	1.71	33.77	35.48	NOTE
r-release-macos-arm64	0.6.0				NOTE
r-release-macos-x86_64	0.6.0	1.00	45.00	46.00	NOTE
r-release-windows-x86_64	0.6.0	3.00	0.00	3.00	NOTE
r-oldrel-macos-arm64	0.6.0				OK
r-oldrel-macos-x86_64	0.6.0	1.00	43.00	44.00	OK
r-oldrel-windows-x86_64	0.6.0	4.00	68.00	72.00	OK

Check Details

Version: 0.6.0
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘ggmugs.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.6.0
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [9s/101s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ggmugs) > > test_check("ggmugs") Loading study1... Loading study2... Saving _problems/test-ggmugs-12.R [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ggmugs.R:2:3'): ggmugs works ─────────────────────────────────── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(input_files, function(x) { message(paste0("Loading ", x[["study_name"]], "...\n")) d = data.table::fread(x[["summary_stat"]]) d[["study_name"]] = x[["study_name"]] d[["chr_pos"]] = paste0(d[["chr"]], "_", d[["pos"]]) d[["logp"]] = -log(d[["p"]], 10) d = dplyr::arrange(d, chr, pos, dplyr::desc(logp)) d = dplyr::distinct(d, chr_pos, .keep_all = TRUE) d = dplyr::select(d, chr, pos, chr_pos, logp, study_name) return(d) })`: i In index: 2. i With name: study2. Caused by error in `download.file()`: ! download from 'https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat2.txt' failed Backtrace: ▆ 1. ├─ggmugs::ggmugs(...) at test-ggmugs.R:2:3 2. │ └─purrr::map(...) 3. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 4. │ ├─purrr:::with_indexed_errors(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ ├─purrr:::call_with_cleanup(...) 7. │ └─ggmugs (local) .f(.x[[i]], ...) 8. │ └─data.table::fread(x[["summary_stat"]]) 9. │ └─utils::download.file(...) 10. └─base::.handleSimpleError(...) 11. └─purrr (local) h(simpleError(msg, call)) 12. └─cli::cli_abort(...) 13. └─rlang::abort(...) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64