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CRAN Package Check Results for Package geneset

Last updated on 2026-11-06 17:52:06 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.8 4.71 45.53 50.24 OK
r-devel-linux-x86_64-debian-gcc 0.2.8 3.21 35.41 38.62 OK
r-devel-linux-x86_64-fedora-clang 0.2.8 OK
r-devel-linux-x86_64-fedora-gcc 0.2.8 34.68 OK
r-devel-windows-x86_64 0.2.8 7.00 90.00 97.00 OK
r-patched-linux-x86_64 0.2.8 OK
r-release-linux-x86_64 0.2.8 4.71 37.60 42.31 ERROR
r-release-macos-arm64 0.2.8 1.00 23.00 24.00 OK
r-release-macos-x86_64 0.2.8 4.00 91.00 95.00 OK
r-release-windows-x86_64 0.2.8 8.00 71.00 79.00 OK
r-oldrel-macos-arm64 0.2.8 OK
r-oldrel-macos-x86_64 0.2.8 4.00 117.00 121.00 OK
r-oldrel-windows-x86_64 0.2.8 10.00 69.00 79.00 OK

Check Details

Version: 0.2.8
Check: tests
Result: ERROR Running ‘testthat.R’ [2s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(geneset) > > test_check("geneset") Auto download warning: downloaded length 1007145 != reported length 2823223 URL: https://genekitr-china.oss-accelerate.aliyuncs.com/anno/go/mf/human_mf_geneset.fst No valid local cache is available. Please download manually via: https://genekitr-china.oss-accelerate.aliyuncs.com/anno/go/mf/human_mf_geneset.fst Then save to: /home/hornik/tmp/scratch/RtmpY0Jxkz/anno/go//human_mf_geneset.fst Saving _problems/test-getGO-4.R [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-getGO.R:4:3'): getGO works ───────────────────────────────────── Error in `read_fst(path, columns, from, to, as.data.table, old_format)`: Error opening fst file for reading, please check access rights and file availability Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-getGO.R:4:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─... %>% .[[4]] 5. └─geneset::getGO(org = "human", ont = "mf", data_dir = tempdir()) 6. ├─base::suppressWarnings(fst::read.fst(destfile)) 7. │ └─base::withCallingHandlers(...) 8. └─fst::read.fst(destfile) 9. └─fst::read_fst(path, columns, from, to, as.data.table, old_format) [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

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