CRAN Package Check Results for Package genekitr

Last updated on 2026-10-14 00:59:34 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.3.0	33.28	274.73	308.01	OK
r-devel-linux-x86_64-debian-gcc	1.3.0	23.68	192.19	215.87	OK
r-devel-linux-x86_64-fedora-clang	1.3.0	29.00	209.34	238.34	OK
r-devel-linux-x86_64-fedora-gcc	1.3.0	28.00	200.64	228.64	OK
r-devel-windows-x86_64	1.2.8	46.00	289.00	335.00	OK
r-patched-linux-x86_64	1.2.8	30.55	280.22	310.77	OK
r-release-linux-x86_64	1.3.0	30.19	257.49	287.68	OK
r-release-macos-arm64	1.3.0	9.00	68.00	77.00	OK
r-release-macos-x86_64	1.3.0	25.00	471.00	496.00	OK
r-release-windows-x86_64	1.2.8	40.00	260.00	300.00	OK
r-oldrel-macos-arm64	1.3.0	13.00	85.00	98.00	ERROR
r-oldrel-macos-x86_64	1.3.0	25.00	309.00	334.00	ERROR
r-oldrel-windows-x86_64	1.3.0	51.00	335.00	386.00	OK

Check Details

Version: 1.3.0
Check: examples
Result: ERROR Running examples in ‘genekitr-Ex.R’ failed The error most likely occurred in: > ### Name: plotVenn > ### Title: Venn plot for groups of genes > ### Aliases: plotVenn > > ### ** Examples > > k1 = requireNamespace("ComplexUpset",quietly = TRUE) > k2 = requireNamespace("ggsci",quietly = TRUE) > k3 = requireNamespace("RColorBrewer",quietly = TRUE) > if(k1&k2&k3){ + library(ggplot2) + set1 <- paste0(rep("gene", 30), sample(1:1000, 30)) + set2 <- paste0(rep("gene", 40), sample(1:1000, 40)) + set3 <- paste0(rep("gene", 50), sample(1:1000, 50)) + set4 <- paste0(rep("gene", 60), sample(1:1000, 60)) + set5 <- paste0(rep("gene", 70), sample(1:1000, 70)) + sm_gene_list <- list(gset1 = set1, gset2 = set2, gset3 = set3) + la_gene_list <- list( + gset1 = set1, gset2 = set2, gset3 = set3, + gset4 = set4, gset5 = set5 + ) + plotVenn(sm_gene_list, + use_venn = TRUE, + alpha_degree = 0.5, + main_text_size = 3, + border_thick = 0, + venn_percent = TRUE + ) + plotVenn(la_gene_list, + use_venn = FALSE, + main_text_size = 15, + legend_text_size = 8, + legend_position = 'left' + ) + } Color length should be same with venn_list, auto assign colors... Warning: themes$intersections_matrix is not a valid theme. Please use `theme()` to construct themes. Warning: `legend.margin` must be specified using `margin()` ℹ For the old behavior use `legend.spacing` Warning: themes$intersections_matrix is not a valid theme. Please use `theme()` to construct themes. Error in `method(update_ggplot, list(ggplot2::theme, ggplot2::ggplot))`: ! Can't merge the `text` theme element. Caused by error: ! `object` must be an <S7_object>, not a S3<element_text/element> Backtrace: ▆ 1. ├─genekitr::plotVenn(...) 2. │ └─ComplexUpset::upset(...) 3. │ └─S7:::Ops.S7_object(...) 4. │ ├─base::tryCatch(return(base_ops[[.Generic]](e1, e2)), S7_error_method_not_found = function(cnd) cnd) 5. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 8. │ └─base_ops[[.Generic]](e1, e2) 9. │ ├─S7::S7_dispatch() 10. │ └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...) 11. │ └─ggplot2:::add_ggplot(e1, e2, e2name) 12. │ ├─ggplot2::ggplot_add(object, p, objectname) 13. │ └─ggplot2:::ggplot_add.default(object, p, objectname) 14. │ └─ggplot2::update_ggplot(object = object, plot = plot, ...) 15. │ ├─S7::S7_dispatch() 16. │ └─ggplot2 (local) `method(update_ggplot, list(class_list, ggplot2::ggplot))`(...) 17. │ ├─ggplot2::ggplot_add(o, plot, object_name) 18. │ └─ggplot2:::ggplot_add.default(o, plot, object_name) 19. │ └─ggplot2::update_ggplot(object = object, plot = plot, ...) 20. │ ├─S7::S7_dispatch() 21. │ └─ggplot2 (local) `method(update_ggplot, list(ggplot2::theme, ggplot2::ggplot))`(object = `<theme>`, plot = `<ggplt2::>`, ...) 22. │ ├─S7::set_props(plot, theme = add_theme(plot@theme, object)) 23. │ └─ggplot2:::add_theme(plot@theme, object) 24. │ ├─rlang::try_fetch(...) 25. │ │ ├─base::tryCatch(...) 26. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 27. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 28. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 29. │ │ └─base::withCallingHandlers(...) 30. │ └─ggplot2::merge_element(t2[[item]], t1[[item]]) 31. │ ├─S7::S7_dispatch() 32. │ └─ggplot2 (local) `method(merge_element, list(ggplot2::element, class_any))`(...) 33. │ └─S7::props(old, idx) 34. │ └─S7::check_is_S7(object) 35. │ └─base::stop(msg, call. = FALSE) 36. └─base::.handleSimpleError(...) 37. └─rlang (local) h(simpleError(msg, call)) 38. └─handlers[[1L]](cnd) 39. └─cli::cli_abort(...) 40. └─rlang::abort(...) Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64