Last updated on 2025-10-10 11:51:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.4 | 54.43 | 444.31 | 498.74 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2.4 | 43.81 | 317.36 | 361.17 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.4 | 813.79 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.4 | 776.15 | OK | |||
| r-devel-windows-x86_64 | 1.2.4 | 58.00 | 371.00 | 429.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2.4 | 54.43 | 434.13 | 488.56 | OK | |
| r-release-linux-x86_64 | 1.2.4 | 51.54 | 428.72 | 480.26 | OK | |
| r-release-macos-arm64 | 1.2.4 | 202.00 | OK | |||
| r-release-macos-x86_64 | 1.2.4 | 413.00 | OK | |||
| r-release-windows-x86_64 | 1.2.4 | 57.00 | 403.00 | 460.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.4 | 193.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.4 | 274.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.4 | 81.00 | 533.00 | 614.00 | OK |
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in ‘geneHapR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
>
> ### ** Examples
>
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+ gff = gff,
+ Chr = hapResult[1,2],
+ start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end, :
Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error: ‘there is no package called ‘GenomeInfoDb’’
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package ‘GenomeInfoDb’
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2.4
Check: examples
Result: ERROR
Running examples in ‘geneHapR-Ex.R’ failed
The error most likely occurred in:
> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
>
> ### ** Examples
>
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+ gff = gff,
+ Chr = hapResult[1,2],
+ start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end, :
Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error: ‘there is no package called ‘GenomeInfoDb’’
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package ‘GenomeInfoDb’
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64
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