CRAN Package Check Results for Package gdalraster

Last updated on 2025-07-19 19:49:46 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.1.0	150.11	207.42	357.53	OK
r-devel-linux-x86_64-debian-gcc	2.1.0	118.61	142.21	260.82	OK
r-devel-linux-x86_64-fedora-clang	2.1.0			700.51	ERROR
r-devel-linux-x86_64-fedora-gcc	2.1.0			682.82	OK
r-devel-windows-x86_64	2.1.0	181.00	738.00	919.00	OK
r-patched-linux-x86_64	2.1.0	165.89	200.99	366.88	OK
r-release-linux-x86_64	2.0.0	152.85	187.07	339.92	OK
r-release-macos-arm64	2.1.0			163.00	OK
r-release-macos-x86_64	2.1.0			441.00	OK
r-release-windows-x86_64	2.1.0	178.00	720.00	898.00	OK
r-oldrel-macos-arm64	2.1.0			173.00	NOTE
r-oldrel-macos-x86_64	2.1.0			400.00	NOTE
r-oldrel-windows-x86_64	2.1.0	220.00	991.00	1211.00	NOTE

Check Details

Version: 2.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘gdal-config-quick-ref.Rmd’ using rmarkdown --- finished re-building ‘gdal-config-quick-ref.Rmd’ --- re-building ‘raster-api-tutorial.Rmd’ using rmarkdown --- finished re-building ‘raster-api-tutorial.Rmd’ --- re-building ‘raster-attribute-tables.Rmd’ using rmarkdown --- finished re-building ‘raster-attribute-tables.Rmd’ --- re-building ‘vector-api-overview.Rmd’ using rmarkdown [gannet:203681:0:203681] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x5564641eab88) ==== backtrace (tid: 203681) ==== 0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7f66771b2df4] 1 /lib64/libucs.so.0(+0x17aed) [0x7f66771b4aed] 2 /lib64/libucs.so.0(+0x17cbd) [0x7f66771b4cbd] 3 /lib64/libc.so.6(+0x19c30) [0x7f668d12bc30] 4 /lib64/libc.so.6(+0x8da09) [0x7f668d19fa09] 5 /usr/local/clang20/lib/x86_64-unknown-linux-gnu/libc++.so.1(_ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEE6appendEPKcm+0x162) [0x7f668331cbe2] 6 /usr/local/clang/lib64/libgdal.so.36(+0xd67e14) [0x7f6679f67e14] 7 /usr/local/clang/lib64/libgdal.so.36(+0xd5da0c) [0x7f6679f5da0c] 8 /usr/local/clang/lib64/libgdal.so.36(_ZN8OGRLayer15WriteArrowBatchEPK11ArrowSchemaP10ArrowArrayPKPKc+0x91a) [0x7f6679f5ae1a] 9 /usr/local/clang/lib64/libgdal.so.36(+0xf227ae) [0x7f667a1227ae] 10 /usr/local/clang/lib64/libgdal.so.36(+0xf1e6db) [0x7f667a11e6db] 11 /usr/local/clang/lib64/libgdal.so.36(GDALVectorTranslate+0x27a1) [0x7f667a117471] 12 /data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/gdalraster/libs/gdalraster.so(_Z7ogr2ogrRKN4Rcpp6VectorILi16ENS_15PreserveStorageEEES4_RKNS_8NullableIS2_EES8_S8_+0x90a) [0x7f667ab3968a] 13 /data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/gdalraster/libs/gdalraster.so(_gdalraster_ogr2ogr+0xb5) [0x7f667aaeb995] 14 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d5bb) [0x556420ba75bb] 15 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdc120) [0x556420bf6120] 16 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c] 17 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495] 18 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0] 19 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc] 20 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6] 21 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe84cc) [0x556420c024cc] 22 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc95b) [0x556420be695b] 23 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c] 24 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495] 25 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84] 26 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x556420bde55e] 27 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe89a7) [0x556420c029a7] 28 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x12b818) [0x556420c45818] 29 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xccbdf) [0x556420be6bdf] 30 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c] 31 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495] 32 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84] 33 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x556420bde55e] 34 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4f84) [0x556420bdef84] 35 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xde250) [0x556420bf8250] 36 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc99a2) [0x556420be39a2] 37 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c] 38 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495] 39 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0] 40 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc] 41 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6] 42 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe84cc) [0x556420c024cc] 43 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc95b) [0x556420be695b] 44 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c] 45 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495] 46 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0] 47 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc] 48 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6] 49 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0] 50 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc] 51 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcc153) [0x556420be6153] 52 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc4d0c) [0x556420bded0c] 53 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x556420bde495] 54 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe1ad0) [0x556420bfbad0] 55 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0fbc) [0x556420bfafbc] 56 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f6) [0x556420bde8e6] 57 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x116a4c) [0x556420c30a4c] 58 /data/gannet/ripley/R/R-clang/bin/exec/R(run_Rmainloop+0xbf) [0x556420c3254f] 59 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x1185bb) [0x556420c325bb] 60 /data/gannet/ripley/R/R-clang/bin/exec/R(main+0x18) [0x556420b1bda8] 61 /lib64/libc.so.6(+0x35f5) [0x7f668d1155f5] ================================= *** caught segfault *** address 0x4d200031ba1, cause 'unknown' Traceback: 1: ogr2ogr(zf_gpkg, mem_gpkg) 2: eval(expr, envir) 3: eval(expr, envir) 4: withVisible(eval(expr, envir)) 5: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)}) 6: eval(call) 7: eval(call) 8: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) 9: doWithOneRestart(return(expr), restart) 10: withOneRestart(expr, restarts[[1L]]) 11: withRestartList(expr, restarts[-nr]) 12: doWithOneRestart(return(expr), restart) 13: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 14: withRestartList(expr, restarts) 15: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) 16: evaluate::evaluate(...) 17: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 18: in_dir(input_dir(), expr) 19: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 20: eng_r(options) 21: block_exec(params) 22: call_block(x) 23: process_group(group) 24: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }) 25: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 26: process_file(text, output) 27: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 28: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 29: vweave_rmarkdown(...) 30: engine$weave(file, quiet = quiet, encoding = enc) 31: doTryCatch(return(expr), name, parentenv, handler) 32: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 33: tryCatchList(expr, classes, parentenv, handlers) 34: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 35: tools:::.buildOneVignette("vector-api-overview.Rmd", "/data/gannet/ripley/R/packages/tests-clang/gdalraster.Rcheck/vign_test/gdalraster", TRUE, FALSE, "vector-api-overview", "UTF-8", "/tmp/RtmpnYmlvs/working_dir/RtmpeV79Jm/file2ff893ff61021.rds") An irrecoverable exception occurred. R is aborting now ... SUMMARY: processing the following file failed: ‘vector-api-overview.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.1.0
Check: installed package size
Result: NOTE installed size is 77.5Mb sub-directories of 1Mb or more: doc 1.4Mb extdata 2.0Mb libs 73.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64