CRAN Package Check Results for Maintainer ‘Florencia I. Pozzi <florenciapoz at hotmail.com>’

Last updated on 2024-05-02 04:01:01 CEST.

Package	ERROR	OK
CleanBSequences	4	9

Package CleanBSequences

Current CRAN status: ERROR: 4, OK: 9

Version: 1.4.0
Check: examples
Result: ERROR Running examples in ‘CleanBSequences-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: DNAStringSetOPR > ### Title: Curing of biological sequences > ### Aliases: DNAStringSetOPR > > ### ** Examples > > SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences")) > PrimerR= DNAString ("GACTGCGTACCATGC") > DNAStringSetOPR (SEQs,PrimerR) DNAStringSet object of length 2: width seq names [1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11... [2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15... Error in .load_package_gracefully("pwalign", "Starting with BioC 3.19, ", : Could not load package pwalign. Is it installed? Note that Starting with BioC 3.19, calling pairwiseAlignment() requires the pwalign package. Please install it with: BiocManager::install("pwalign") Calls: DNAStringSetOPR ... pairwiseAlignment -> .call_fun_in_pwalign -> .load_package_gracefully Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 1.4.0
Check: examples
Result: ERROR Running examples in ‘CleanBSequences-Ex.R’ failed The error most likely occurred in: > ### Name: DNAStringSetOPR > ### Title: Curing of biological sequences > ### Aliases: DNAStringSetOPR > > ### ** Examples > > SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences")) > PrimerR= DNAString ("GACTGCGTACCATGC") > DNAStringSetOPR (SEQs,PrimerR) DNAStringSet object of length 2: width seq names [1] 116 GCCTCGCCTCCCTCTTTGATCAG...CCTTTGCAATCTTCACAAGGTGG 170522-033_K03_11... [2] 113 GTCTACTCGATCGTGATCCGGTA...CCTTTGCAATCTTCACAAGGTGG 170522-033_C05_15... Error in .load_package_gracefully("pwalign", "Starting with BioC 3.19, ", : Could not load package pwalign. Is it installed? Note that Starting with BioC 3.19, calling pairwiseAlignment() requires the pwalign package. Please install it with: BiocManager::install("pwalign") Calls: DNAStringSetOPR ... pairwiseAlignment -> .call_fun_in_pwalign -> .load_package_gracefully Execution halted Flavor: r-devel-linux-x86_64-fedora-clang